barSeed - Barley Seed Development Database

Probe CUST_35092_PI390587928

Source Contig U35_13995

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35092_PI390587928	Hv_44K_v2	AGTGTAAGCTCACCAATCAGTCGCTGTAAAAGTCTGTAGCATGTGCTGTGTTATTCTCCA	1737	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.591	1.588	1.114	0.861	0.353	0.415
Raw	5857.707	9098.153	5619.397	6764.910	986.348	1254.234

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362620	1865	2e-24	1736 - 1795	100	60 / 60	plus	ABC01168 ABC45022
MLOC	MLOC_65877.2	941	2e-24	15 - 74	100	60 / 60	minus	ABC01168 ABC45022
MLOC	MLOC_65877.1	1492	2e-24	67 - 126	100	60 / 60	minus	ABC01168 ABC45022
MLOC	MLOC_65877.3	1986	2e-24	15 - 74	100	60 / 60	minus	ABC01168 ABC45022
JLOC1	JLOC1_43370.1	1679	8e-25	1466 - 1525	100	60 / 60	plus
Harvest21	ABC01168	1245	2e-21	72 - 124	100	53 / 53	minus	ABC01168
Harvest35	U35_13995	1797	3e-25	1738 - 1797	100	60 / 60	plus

Contig Sequence (1797 bp)

>U35_13995 1797 Hv_44K_v2
GTCGAAGCCTTCTACTCTTCTCCCTTTTGTTTCCCCTCGACGGCGGCGGCGGCGGCGGCA
ACCAGGGTTTAGAGGAGGAGAAGCTTGCCCGGCGCAAAACCCTAGCCCTGCACCTTCATC
TACGGATTCACCGCGCCTCTGCCGCGTATCCTTTACGAGTGCCCTGCCTCGCTGCATCGG
CGGTCGCGATGAGGGTGAAGGTGATATCGCGCTCGACCGACGACTTCACGCGCGAGCGCA
GCCAGGACCTGCAGAAAGTATTCCGCAATTATGATCCAGCACTCCGTAGTCAAGAGAAAG
CTGTTGAGTACACTCGGGCCCTTAATGCTGCAAAGTTAGAGAAGATATTTGCCAGGCCAT
TTATTGGAGCAATGGATGGTCACATTGATGCTGTTTCGTGCATGGCGAAGAACTCCAATT
ATGTGAAAGCTATGTTTTCTGGCTCGATGGATGGGGATATTCGACTATGGGACATTGCTG
CAAGGAAGACAGTCTGCCAGTTCCCTGGACACCAGGGTGCTGTGAGAGGTTTGGCAACAT
CTACCGACGGTGATCTTCTGGTATCCTGTGGTGTTGATTGCACTGTTCGACTCTGGAAAG
ATCCTATGCGTAAGATGATGGACAGTAATGATGCTATTGGAGATGCTTCCCAGCCGTCAG
CAGTCTATACATGGAAGCATGCATTTTGGGGTGTTGACCACCAGTGGGATCATAATGTTT
TCGCAACTGTTGGTGCTCAGGTAGATATATGGGATCATAACAGGTCGGAGCCAATAAATA
CCTTCGAATGGGGTAAAGATACAGTTCTTTCTGTGCGGTTTAATCCTGGAGAACCTGATG
TTTTACTTACATCATCTAGTGATCGGAGTTTAACACTTTTTGACCTGCGCATGTCATCCC
CAGCTAGAAAGTTAATCATGAAGACAAGGTGCAATTCAGTTTGCTGGAACCCTAGGGAGC
CCATGAACTTCACTGCTGCAAACGAAGATACAAACTGTTATTCTTTTGATGCTAGAAAGC
TGAATGAAGCCAAGGTTGTTCACAAGGGTCATGTTTCAGCAGTGATGGATGTTGATTACA
ACCCAACAGGACGGGAATTTGTTACTGGTTCCTATGATAGAACGGTACGGATCTTCAATT
ATATTGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGGGTGTTTTGTG
TGAAATACACATATGATGGGACCTATCTAGTTTCTGGCAGTGATGATACAAATCTTCGAC
TGTGGAAGTCCAATGCTTCAGAACAATTGGGAGTTGTTCTTCCAAGGGAACGCAAAAAGC
AAGAATATCTAGATGCTGTCAAGCTGCGGTATGGTCACCTTCCAGAAATCAGGCGGATTG
TCAAACATAAGCACGTACCCAAGCCGATCTACAAGGCAGGCAAGATACGGCGTGCCATGA
TTGAAGCAGAAAGCCGGAAAGAAGAAAGAAGGCGAGCGCACAGTGCTCCAGGGAGCAGGA
CCATGCAGCCCTTCAGGAAGAGAAGGCTCATCACAGAAGTTGAGTAGGGTGGATCTGACC
ATGGCGAGGCCAAACAAAGTGGTATTCTGGTGTTTAATTTTTGATCGAGTGTGAGAGATG
GCATGTTGGGAACATATTTATTATGTGGAGTACTTGGAAACCTTAGATGAAGCACCGGAT
TACTTTTGACAAGGAAAAAAGAACTTGTGTATCAGCGATGCTAGTTTGTGACCCTCGAGT
GTAAGCTCACCAATCAGTCGCTGTAAAAGTCTGTAGCATGTGCTGTGTTATTCTCCA

Homology of Contig U35_13995 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g13730.1	453	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi5g21640.1	453
Arabidopsis v10	AT4G28450.1	452	nucleotide binding;protein binding \| chr4:14061724-14064582 REVERSE LENGTH=452