barSeed - Barley Seed Development Database

Probe CUST_3508_PI390587928

Source Contig U35_32481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3508_PI390587928	Hv_44K_v2	TGCGAGTCTCCAATATCCCGGCCTCCGCCGTCGCTAAAGAGCTCCTACAGTTCTTCGATT	86	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354076	3690	2e-24	90 - 149	100	60 / 60	plus	ABC14349 ABC43239
MLOC	MLOC_79769.1	810	2e-24	316 - 375	100	60 / 60	plus	None
JLOC1	JLOC1_53121.1	672	8e-25	160 - 219	100	60 / 60	plus
Harvest35	U35_32481	394	3e-25	87 - 146	100	60 / 60	plus

Contig Sequence (394 bp)

>U35_32481 394 Hv_44K_v2
CCCGCCGTAACACGCCCCAAACCCTTCTGTTCCCCCCAAAATTCCGATGGCGACGGCGGC
GTCGGTGCCCGTCTCCACGGCGACGGTGCGAGTCTCCAATATCCCGGCCTCCGCCGTCGC
TAAAGAGCTCCTACAGTTCTTCGATTCCGCCGTCGCCGCTGCCGGCGGAGCCTACGCCTG
CGAGATTGCCGCCACCCGCCGCGGCTGGCTAAGCCGAGGCAATGGGAGCGTCCAGTTCGA
TTCCACCGCCACCGCAACTCTCGCCGGAGAACTCGCCTCCTCCGGTCGCCTACCCCGCTT
CCTCGGCTCCCTCCTCTCCGTCTCCCCTGCCCCCGCGGACCTTCTCCCCCGCGCGCCCGA
CCTTTCTCTCCGCGTGGCCGACGCCCGCCTCGTT

Homology of Contig U35_32481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None