barSeed - Barley Seed Development Database

Probe CUST_35089_PI390587928

Source Contig U35_13996

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35089_PI390587928	Hv_44K_v2	GCGGTCAGAGTCTCTGCTTTTCCATTTTCTTTTGTGCGTGTTGTATTTCGTTGTTAATTT	753	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370551	888	7e-23	754 - 814	98	60 / 61	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
Harvest21	ABC01184	613	3e-25	17 - 76	100	60 / 60	minus	ABC01184
Harvest21	ABC50184	668	6e-22	32 - 92	97	59 / 61	minus
Harvest35	U35_13996	829	3e-25	754 - 813	100	60 / 60	plus
Harvest35	U35_48425	668	6e-22	32 - 92	97	59 / 61	minus

Contig Sequence (829 bp)

>U35_13996 829 Hv_44K_v2
GCTGCAATCCCCTCTCCTCCTCCAGTCCTCCAGCGAATCCACCCCACCGTCGGCATCCAT
GGCGCCCAAGGCCGAGAAGAAGCCGGCGGCGAAGAAGCCGGTGGAGGAGGAGCCCGCGGC
GGAGAAGGCCGAGAAGACGACCGCCGGGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGC
GGGCAAGTCGGCGGCCAAGGAGGGCGGCAAGGCCAAGAAGAAGGCCAAGAAGAGCGTGGA
GACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATCTC
CTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGG
CGAGGCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCCA
GACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTTGCCAAGCACGCCGTCTCCGAGGGCAC
CAAGGCCGTCACCAAGTTCACCTCTTCCTAGGCTGTTCCTGCTCCTGTGTTCCGTAGTCT
TAGGTGCCCCGTCTGTGTGTGTTTGTGGCCGTGCTATCGTGCAAGAATCGCATCGCCATG
TTTCTGGATCTCGAGAAATAGTAACGGTGCTTGCCTCATGTTCAGTTCAAAAAAAAAAAA
AAAAATGTTGCTTTGTTCTGGTCTTGAATTCTGGACTTTGAATCAAAGTGCTAATTCTCT
TCAAAAAAAAAAAAAAAAAATGTGCTCTTATTAGCGGTCAGAGTCTCTGCTTTTCCATTT
TCTTTTGTGCGTGTTGTATTTCGTTGTTAATTTTGCTGTCACATGACAC

Homology of Contig U35_13996 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38300.1	151	3e-54	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27760.1	154	1e-54
Arabidopsis v10	AT5G22880.1	145	1e-52	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145