barSeed - Barley Seed Development Database

Probe CUST_35084_PI390587928

Source Contig U35_12747

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35084_PI390587928	Hv_44K_v2	CCGTGTTCCTGCTATTGCCATGTGTATGCCAATTTATTCTTTTGAAAAATGTTTGTGTAT	552	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.756	1.905	0.983	0.858	0.187	0.229
Raw	201.440	352.131	153.373	221.039	16.914	22.276

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34538.1	977	2e-24	797 - 856	100	60 / 60	plus	ABC28650
JLOC1	JLOC1_22282.1	1087	8e-25	788 - 847	100	60 / 60	plus
Harvest35	U35_12747	661	3e-25	553 - 612	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_12747 661 Hv_44K_v2
GCAGACTGAAGACCGACATGGCCCGTATCGGCGTCGCAGTGCTCGCGCTCCTGGCGGCCG
CCGCGGCGGTCGCCTGCCTGCCGGCCCCGGCCTCCGCGGGCGAGCAGGACTCCATGCTCC
TGTCGCGCACGGCTACCTGCGACGGGGCCGTCGGGGAGTGCGGCGTAGACGAGGACGAGG
AGATGGGGACGGGCGCCGCCGGCACCGGCGAGGCCCTGCGCCGGTCGCTGGCGCGGAAGC
CGACGACCAGATCCCCTGCAATAAGCGCGACAAGTCCTACTACACCAACTGCGGCTCCAT
GCAGCAGATGAACCCCTACACGCGCGGCTGCTCCGCCATCACGCGCTGCGCCCGCAACAT
GGTCTGATCGCGTCCTACGCATCCCGGCCTCGTCCATCTCGCGCACGTACGGCAGACCAT
CGGCGGAGAGGAGGTGTGGCCGTGTGAGCGCCTAATTAAGCACTCTATGCGTTTCTGCTG
CTACAACATTGATGATCCAACAAAATTAACGACTGTTATCGTTTTCGTTTGTCACTAGCT
TCTATGTACCCACCGTGTTCCTGCTATTGCCATGTGTATGCCAATTTATTCTTTTGAAAA
ATGTTTGTGTATTTGAAGAAGAACAGAGTTCCATTTTCCCGTCCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_12747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None