barSeed - Barley Seed Development Database

Probe CUST_35073_PI390587928

Source Contig U35_24729

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35073_PI390587928	Hv_44K_v2	AGAGGCTGGCAGAGTTGATGAATGTAATTGTTTGTGCGAGATCAATATTATTGTGATAAT	461	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.295	1.445	1.121	0.761	0.274	0.302
Raw	2690.197	4646.387	3155.547	3385.360	427.378	515.704

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36561.2	2342	2e-24	2270 - 2329	100	60 / 60	plus	None
JLOC1	JLOC1_23556.4	2385	8e-25	2248 - 2307	100	60 / 60	plus
JLOC1	JLOC1_23556.3	2367	8e-25	2230 - 2289	100	60 / 60	plus
JLOC1	JLOC1_23556.2	2408	8e-25	2271 - 2330	100	60 / 60	plus
JLOC1	JLOC1_23556.1	2390	8e-25	2253 - 2312	100	60 / 60	plus
Harvest21	ABC52078	490	3e-25	414 - 473	100	60 / 60	plus
Harvest35	U35_24729	554	3e-25	462 - 521	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_24729 554 Hv_44K_v2
CCACGCGTCCGCTGAATAGTGCATGAGATGTGCATACCTCCTAACTGATTCTTTGATGTT
CTCTTGAATACATTGAAGAACATCTGGCGCATCACGCGCCACCATTGCTTGGAGCGCATG
GTGATCCCCACGCACCATGTGCTGCCATTTGATACGCTGCTTTTCGGTCCGGTGATGTAC
TGTCGAAGATGACGCCAATTCATCGTGTAGGTGTAGAGTGCGAACTAACGTGTGAATAGC
GAGAGGTGTGAGCAGTTTTTCCATTCTGGATGGTCATATTCTTCTATGTGTTAGGTCTTT
CGTGTGGGTTTGACCACTCTAAAGAGACGGCTGGAGTTTTCATGGATATTATTGCGGGCT
ATTTTTCTGCAAATCTTTTTGTTATCTGTCGGGGGTCGATTGGGCTCTAGTCTTCAGGTT
GGCAGAGGTTTTACTTCCCAGGTGGCTGACTTTACATGAGAAGAGGCTGGCAGAGTTGAT
GAATGTAATTGTTTGTGCGAGATCAATATTATTGTGATAATGAATTGTTCTGAGACTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_24729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None