- Probe CUST_35071_PI390587928
- Source Contig U35_36702
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35071_PI390587928 | Hv_44K_v2 | CTATAGCTATAGCTAGATGATATCCCGCATGTTGATGTGAGAATTGATTGTGGTATAATT | 282 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.653 | 1.813 | 1.385 | 0.519 | 0.084 | 0.084 |
| Raw | 19838.967 | 20933.467 | 13834.667 | 7677.703 | 492.426 | 518.494 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_36702 | 398 | 3e-25 | 283 - 342 | 100 | 60 / 60 | plus |
Contig Sequence (398 bp)
>U35_36702 398 Hv_44K_v2 GGCTCGTGTCGCTGCACCAATGGCCCTTCTCGTCCTAGTTTTGCTGGTTGCCTCAGCGAT GTCGTCGGAGGAACTGCATTGCTGCACAGACCATCATGACTAGGGCAATGGGTTGAAGAA CAAGGGTTGCAGTCTGCCGGAGCAGAACGTCGAGTGCAACACGTGGTGCCAGTCGGACTG CCGTGGTGGCGAATGTGTAATGCGTGCCGGGCTGCACTTCTGCCATTGTTACTGTTGAGG AGGCGCGGCGGTATTTCGCCGTTCGAATTTGTATGCAACGAGCTATAGCTATAGCTAGAT GATATCCCGCATGTTGATGTGAGAATTGATTGTGGTATAATTAAATTTGATTTGGTTGTA TGGAACAAGGATATTTAGATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_36702 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |