barSeed - Barley Seed Development Database

Probe CUST_3506_PI390587928

Source Contig U35_18190

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3506_PI390587928	Hv_44K_v2	TCATCATACTGTATCTATTTGCCGAAGCTACCCAGGAACATATCCAGGAGCAGGTAACCA	1669	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362299	2866	2e-24	2408 - 2467	100	60 / 60	plus	ABC09348 ABC13695
MLOC	MLOC_65569.2	2393	2e-24	1685 - 1744	100	60 / 60	plus	ABC09348 ABC13695
JLOC1	JLOC1_43156.1	2271	8e-25	1751 - 1810	100	60 / 60	plus
Harvest21	ABC09348	2145	3e-25	1670 - 1729	100	60 / 60	plus	ABC09348
Harvest35	U35_18190	2193	3e-25	1670 - 1729	100	60 / 60	plus

Contig Sequence (2193 bp)

>U35_18190 2193 Hv_44K_v2
GAAAGCTAATTGACGGTGNGAAGAAATAAGGTTGCAACAGAATTTGCCACGTCACTTGTC
CAGACATTGATTACTCAGGACTCTGCTAGTATCTCAGAACTTTATGATGTTCTTGATGCG
CTATCAAAGATTTCAAGGAGGCCAGGTTCACCTGATTTTTTGCAACAGTTGACTGAGATT
GCAAGGAATAATGCCAACAATGCTCCTGGTTTTGCTTTTGGGAAGGATGACAGACTTAGA
CAATCGAAGGATAAAAAGGTTCTACCTAGCCGAGCAAACAAAGAGGAAAACAGTGTTAAC
GACCCCATTGTAGCTGATTCTGTTGCTTTTCAAGACCAGGTTGCACACCTATTTTCTGAG
TGGTGTCAAGTATGTGATCATCCAAGTGCTTGTGATGCGGCGTATAGTCGTTATGTTCTG
CAGTTGCAACATATTGGCCTGCTGAAGGGAGACGAATTTACTGAGCGTTTCTTTCGAATT
CTCACGGAACTTGCTGTTGCACACTCTCTAGTCTCTGAGCAAATTACTGCTCCTGGTGGA
TTGTCCCCACAGTCATCACATATATCATATTTCCCCATTGATTCATATTCGAAGCTTGTG
TCTGCGGTGCTAAAGAACTGTTCAGTGGAAATAGGACCAAACAAAGGCAGCCTTCTTCCC
AAGATTCTGTTACTGACAATTAGGATCATCCAGAAAGAAGCTGAAGAGAAGAAAGCTTCA
TTTAACCCCCGACCATACTTTCGTCTGTTTATAAATTGGCTGAATGACCTTATTACATCT
GAACCTCATCATGATGGAACTAATTTGCAGGTTTTGACTGCATTTGCAAATGCATTCCAT
GTACTGCAACCCCTGAGAATTCCTAGTTTGAGCTTTGCTTGGCTTGAGTTGGTGAGTCAT
AGAACCTTCATGGCAAGACTGCTGAAGGGCAATTCACAAAAAGGGTGGCCTTTTTTCCAT
CGGCTGCTTATTGATCTGTTCAAATTCATGGAACCGTATTTGAGAACTGCTGACCTTTTA
GAACCAGTGCACCTTATGTACAAAGGGACTATGAGAGTGCTTCTTGTACTACTACATGAC
TTTCCTGAATTTCTGTGTGACTATCACTTCAGTTTTTGTGACGTGATCCCTTCCAGTTGC
ATTCAAATGCGCAATGTCATTCTTAGTGCTTTTCCGCGCAACATGAGACTTCCAGACCCA
TCTACTCCTAACTTGAAGATTGATCTGCTAGCTGAAATTTCAGTACCTCCACGAATCATG
TCAGATGTCGATGGTGCCCTCAAGTCAAAGCATATGAAGACTGATGTCGATGAGTATCTT
AAGAGACCAGAAGGCTCATCCTTTTTGAGTGATCTGAAGCAAAAGTTGCTGCTGCCCCAG
AATGAAGCTAATGTTGCTGGGACACGCTACAATGTGCCTTTGATGAATTCACTTGTTCTC
TACATTGGCATCCAAGCGGTGCAACAACTGCAAGTGAACAAGGCTAATGCGTCTGCTGCG
TCAGGACAGCAGATTAATCATAGTACAATGGATATTTTTCAGATTGAAACAGCCACTGAA
TTTTTCAAATATCTTGTAACAAACTTGGATACAGAGGGGCGCTACCTATTTTTGAATGCG
ATCGCTAACCAACTGCGCTACCCGAATAGCCACACACACTACTTCTCCTTCATCATACTG
TATCTATTTGCCGAAGCTACCCAGGAACATATCCAGGAGCAGGTAACCAGGGTTCTCTTG
GAACGTCTGATAGTGAACCGTCCTCACCCCTGGGGATTACTCATTACCTTCATCGAGCTG
ATAAAGAACCCGCGCTACAACTTTTGGAACCGATCCTTCACACACTGCGCGCCTGAGATT
AAACAGCTGTTTGAGTCGGTGGCAAAGTCATGCGGTGGAGCCGCTGGAAAAGCAGTGGAT
GATGGCTCTGATGGCGGCCACTAATGCATCTAGTTTCTTGTAAATAGTTGCTGCCTGTCA
TGGCCTGTCTAATGGGACGATGAGCGGTCTGACTTGCTGGCAGATTTGTTTTGTATCATA
GTATTGTAACTGGATATTGTGTGATGAGGGTTGTAGCGAACCGTCTTAACCATTAGATGT
TTCATAGTTAATGCAAATATTACTCTTCATATTGTTTGTGAAAATCAGGTGTTTTGTCTT
GTCTTGGTAATTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g40780.1	2407	protein\|CCR4-Not complex component, Not1domain containing protein, expressed
Brachypodium v1_2	Bradi1g78550.1	2415
Arabidopsis v10	AT1G02080.1	2431	transcription regulators \| chr1:373335-386682 FORWARD LENGTH=2431