barSeed - Barley Seed Development Database

Probe CUST_35069_PI390587928

Source Contig U35_36705

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35069_PI390587928	Hv_44K_v2	TTTTCTAATCAGTCACCAAGCATCACTTCATCTGTACCTGTTGGATTATCAGGTGCCTAC	443	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.996	1.143	1.346	0.873	0.588	0.461
Raw	277.671	214.861	255.347	224.038	60.097	52.359

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81592.1	2802	2e-24	1908 - 1967	100	60 / 60	minus	ABC15846
JLOC1	JLOC1_54269.1	3154	8e-25	877 - 936	100	60 / 60	plus
Harvest21	ABC31946	525	3e-25	444 - 503	100	60 / 60	plus
Harvest35	U35_36705	525	3e-25	444 - 503	100	60 / 60	plus

Contig Sequence (525 bp)

>U35_36705 525 Hv_44K_v2
GTGATAGGATTGGTAGGCTGTCATCATCTGACAAAAGCTGGAAGAACTCTGAGGAAGAAG
AGTACATCTGGGACGACATACGTTCTCAAGGAGCAGATTATGGAGGTGCCAGTTCTGCAA
GGAAAGGAGAACCCTTGGCTGACGATGGCAATATTAGAAGCTTCCATAGGGCTAATTGGG
CAGAGCCTGGAGACCCGTTGGACCCTGACTTCCACAAACAAGATAGCATCCCAAGATTTG
GACATCCAACAAGCCAAGATAGAAGACTTGCACCGTACATGGATCATGCAGAGTACCTTC
ATAGTAAGCGCGAGGGGGAACCAAGAATTGATAGGGATATGTGGCCTGAAGGACAACCAT
TCCCGGAATCTCGTGGCTCCTCTCTCTGGTTATCCCAGGAAAAACCTCGTTCAGACATTG
GGCGGGATCCCAGGATATCAAGGTTTTCTAATCAGTCACCAAGCATCACTTCATCTGTAC
CTGTTGGATTATCAGGTGCCTACGCTGGACGATCAAGCCTTGAAA

Homology of Contig U35_36705 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39270.1	1070	6e-79	protein\|ZOS9-20 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi4g38387.1	1022	4e-84
Arabidopsis v10	None