- Probe CUST_35065_PI390587928
- Source Contig U35_36709
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35065_PI390587928 | Hv_44K_v2 | CTCTGCGAGGCGTGTGGATCGCGCACTGACGACGGCACAGAGCGAAAGCTCGGCGCCTGG | 50 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.273 | 0.903 | 3.386 | 2.220 | 0.481 | 0.245 |
| Raw | 36.303 | 40.939 | 135.174 | 138.237 | 10.800 | 4.471 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69205.1 | 2043 | 2e-24 | 892 - 951 | 100 | 60 / 60 | plus | ABC06765 |
| JLOC1 | JLOC1_45846.1 | 2403 | 8e-25 | 873 - 932 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06765 | 1416 | 3e-25 | 230 - 289 | 100 | 60 / 60 | plus | ABC06765 |
| Harvest35 | U35_36709 | 110 | 3e-25 | 51 - 110 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17053 | 1492 | 3e-25 | 230 - 289 | 100 | 60 / 60 | plus |
Contig Sequence (110 bp)
>U35_36709 110 Hv_44K_v2 CCCCGGTCGGTAGGGGGGCCCCNCACGGCTAGCTCCCGCTCGTGAAATCCCTCTGCGAGG CGTGTGGATCGCGCACTGACGACGGCACAGAGCGAAAGCTCGGCGCCTGG
Homology of Contig U35_36709 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |