- Probe CUST_35063_PI390587928
- Source Contig U35_12752
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35063_PI390587928 | Hv_44K_v2 | TTATGGCAGTCCACAACAAGCCTATGTACGGTCTTGATCTGAAGATCTTATTATTACTAC | 415 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.389 | 0.325 | 1.481 | 2.640 | 1.817 | 1.158 |
| Raw | 2.832 | 2.763 | 28.207 | 74.055 | 17.764 | 12.825 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_76269.1 | 1866 | 7e-23 | 1810 - 1866 | 100 | 57 / 57 | plus | ABC33571 |
| Harvest21 | ABC33571 | 497 | 3e-25 | 413 - 472 | 100 | 60 / 60 | plus | ABC33571 |
| Harvest35 | U35_12752 | 500 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus |
Contig Sequence (500 bp)
>U35_12752 500 Hv_44K_v2 GAGGGTCCTGTACTATTCGGTGCAGACGCGCCGGAGCTTCCCGCTTTTCTTGGACTCGGG AGCGGACCCGACAACCGTCACGCACGGATTGGAGGAGACGACGGTAGCCGCCGGCCGGTG GTGGTCGGGGCCCAGGTACCAGTCGCTGCGCAACACGCAGCGGAGCAGCGTCGCCGGGGC ATCGTGGGGCATCCGGCAGACGTACAGCTACGAGGCCACCGACGGGTGCTACTTGAGGAA CGTGACCAGCAGCGGTTACACCATCGTATCGGACAAATCCAGTGAGGCGTGCCACGACTG AAGGGGCCATTGTCTTAATCTACACTTACACTACACTACACACAGGATCGAGCAATATAT AAATAAAATAAAGTGTACGGTGTGGTAAAGCCTGGGCAGTTTCTATATTCGCAGTTTATG GCAGTCCACAACAAGCCTATGTACGGTCTTGATCTGAAGATCTTATTATTACTACTTTTT TTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_12752 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |