barSeed - Barley Seed Development Database

Probe CUST_35056_PI390587928

Source Contig U35_24730

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35056_PI390587928	Hv_44K_v2	AAGGAGTGGTATTTCTACAGCCTAAAGGATCGAAAATACGCGACGGGGCAGCGCACGAAC	339	GeneList: black MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.265	0.370	0.653	1.593	2.185	2.935
Raw	40.790	74.430	141.869	501.022	263.804	389.200

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64240.1	843	2e-24	353 - 412	100	60 / 60	plus	None
MLOC	MLOC_64240.2	1322	2e-24	353 - 412	100	60 / 60	plus	ABC33524
JLOC1	JLOC1_42163.2	856	8e-25	353 - 412	100	60 / 60	plus
JLOC1	JLOC1_42163.1	1411	8e-25	409 - 468	100	60 / 60	plus
Harvest21	ABC19875	456	3e-25	340 - 399	100	60 / 60	plus
Harvest35	U35_24730	456	3e-25	340 - 399	100	60 / 60	plus

Contig Sequence (456 bp)

>U35_24730 456 Hv_44K_v2
CCATCCCCCTCTCTCTCTCTCTCTCTCTTGCTTGCTTGCTTGGCCTGTCCGTTTCTCTCT
CTACTATTGTGTTCTCCTCTCATCGATCAGCAAGGAGGGAGGGGGGAGGAGGGGAGGCAG
AGATAGAGAGAGATGTCGATGAGCTTCTTGAGCATGGTGGAGACGGAGCTGCCGCCGGGG
TTCCGGTTCCACCCGAGAGACGACGAGCTCATCTGCGACTACCTCGCGCCCAAGGTCACC
GGCAAGGTCGGCTTCTCCGGCCGCCGCCCTCCCATGGTCGACGTCGACCTCAACAAGGTC
GAGCCATGGGACCTCCCTGTGACTGCATCGGTGGGAGGCAAGGAGTGGTATTTCTACAGC
CTAAAGGATCGAAAATACGCGACGGGGCAGCGCACGAACCGGGCGACGGTGTCGGGGTAC
TGGAAGGCAACCGGGAAGGATAGGGTGGTGGCGCGG

Homology of Contig U35_24730 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41680.1	334	2e-68	protein\|No apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi4g02060.1	315	1e-70
Arabidopsis v10	None