- Probe CUST_35054_PI390587928
- Source Contig U35_24732
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35054_PI390587928 | Hv_44K_v2 | CCCAAATTCTTTGTTCTTAGTTACTGCACATTGATTGTTTATCAAAGTTATGTGGATGGG | 676 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.954 | 1.479 | 1.220 | 0.943 | 0.437 | 0.473 |
| Raw | 419.605 | 509.758 | 363.784 | 441.010 | 71.559 | 84.637 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73012.2 | 2788 | 2e-24 | 65 - 124 | 100 | 60 / 60 | minus | ABC23171 |
| MLOC | MLOC_73012.1 | 2794 | 2e-24 | 66 - 125 | 100 | 60 / 60 | minus | ABC23171 |
| JLOC1 | JLOC1_48593.6 | 2726 | 8e-25 | 2553 - 2612 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48593.5 | 2720 | 8e-25 | 2547 - 2606 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48593.4 | 2829 | 8e-25 | 2656 - 2715 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48593.3 | 2823 | 8e-25 | 2650 - 2709 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48593.2 | 2795 | 8e-25 | 2622 - 2681 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48593.1 | 2754 | 8e-25 | 2581 - 2640 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC23171 | 771 | 3e-25 | 36 - 95 | 100 | 60 / 60 | minus | ABC23171 |
| Harvest35 | U35_24732 | 771 | 3e-25 | 677 - 736 | 100 | 60 / 60 | plus |
Contig Sequence (771 bp)
>U35_24732 771 Hv_44K_v2 CAATGATGATGAGGCCTCACTGCGAGCTGCAGCTTTACCTATAAGCTTGCTTTCCTTCCA GAATCTTGTATATCCCCTTGATGAGAGGTTGACTTTATCTGGGCTTGGCTATCACTATGG AATTGAAGAAGAAGTTATCCGAACTTCAGCATCGTTGCACTACAATGGTAATATGAAACC TTGGCTTGAATTGGGTATACCAAATTACAGGAAGTACTGGAAGAGGTTTCTGGCACGAGA TGAGCGATTCATGGACGAGTGCAATGTAAGTCCATAGCATACTTTGGACCTGGAAACCAG AAGATTTGACGGTAGATTGTTTCGTCTACTGCTGTACTATATACCAAGAGGACAAGCGGC ACTTTCAGTGAAAAGACCAGGAAAGCAGTCATTAGCCATCAATTTTGACAGAGTAGATCC AACACCATCTATTCATTGAATTAGTGAGCTTGATGGATGTTTTTTCTGCAGTTAGAGAAA TTAGTGTTAAGTCGAAGGATAATGCAGTAGACAATGGTGATCTGTAGTGGTGAGGCTTCA GGTAAAAGGGAGTGTCACTCTCATCATCTAGATTACGGAACAGGATTGTTGGCGATGCGT TGTGGCACCTTTAATTGAAATTGGTGCCTTACACGTCATTGATGCAGGCTGATTCTTTTC TTCGTTAAATTTTTGACCCAAATTCTTTGTTCTTAGTTACTGCACATTGATTGTTTATCA AAGTTATGTGGATGGGAAGTATATTTTGTTCGTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_24732 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g63520.1 | 626 | 2e-51 | |
| Arabidopsis v10 | None |