barSeed - Barley Seed Development Database

Probe CUST_35052_PI390587928

Source Contig U35_24734

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35052_PI390587928	Hv_44K_v2	GACTTCGACAGTTTGTTGTCAAGTTGCTCTGTCAGAGAAACTGATAGGGTTAAGTGGATA	892	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.214	1.425	1.237	1.236	0.547	0.536
Raw	273.638	554.329	404.196	646.366	99.550	105.364

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57799.2	2347	2e-24	38 - 97	100	60 / 60	minus	None
MLOC	MLOC_57799.1	1900	2e-24	222 - 281	100	60 / 60	minus	None
JLOC1	JLOC1_37519.2	1902	8e-25	1629 - 1688	100	60 / 60	plus
JLOC1	JLOC1_37519.1	1809	8e-25	1536 - 1595	100	60 / 60	plus
Harvest21	ABC25633	659	3e-25	600 - 659	100	60 / 60	plus
Harvest35	U35_24734	952	3e-25	893 - 952	100	60 / 60	plus

Contig Sequence (952 bp)

>U35_24734 952 Hv_44K_v2
GGCGATTGGGCCCTTCGAAGATGCTCGAGCGGCCGCTATTTCCCTAATTTGTGGGCAAGC
TTGGCAGATGAGGTTCCAGCCTGGGTTAATGAGAAACGCAACAAAACATCTGTTGAGCGA
ACATTACGCTGGCTTGACGCATGTATTGCATTGGATGCGGCTGCTGGGAAAAACAGTTTA
GGTGTAGTTGTTGGGGGATCCAGTATAGAACAACGAAAACTGTGTGCCACTGAAGTATCG
AAGAGAAATGTATCAGGCTTTTGGATTGGAGGGTTTGGCCTTGGAGAGAGTGTTGAAGAA
CGTTGCGGTTTACTCAATGCAGTAACAGATTGTTTGCCATTGGAGAAACCTCGCATTGTC
TCTAGGCTTGGTCTTCCAGAGGAGGTCTTGGAGGGTGTAGCTTCTGGCATAGACCTTTTT
GATTCCACATACATTTACCAACTTACTATGGGTGGTTTTGCACTGATCTTCCCCATTGAC
ATGGTTGAAAGAGAGATGCAGAATGGTGTATTCGACAGTAGTTCTGGGGATTCTGCAAAG
ATTAACCTGCGTGCAACAACATATCGGAAGGACACGTCACGGATAGTCGATGGCTGTGGC
TGCTTCACGTGCCAGAATCACACCCGTGCCTATCTCAACCATCTGATCAACGTCCACGAG
ATGCTGGCTCAGATTCTACTGGAGATACATAACACCCATCACTATCTCCGGTTCTTCCGG
TCGATACGGGAGGCGATCAAGGCTGGAGAATTCGATATCTTCTGGAAGCAGTTTGTTGAA
AACAGGCGCTCCCAGATTGCTGCTGCTGCTGCTGCGCTGTAGAACTTAATTCGTACAAGA
TCTGTGCAATTTGTGATAAAAAATTCTCAGTCAGGAGGTCTTTTAGGGTGGAGACTTCGA
CAGTTTGTTGTCAAGTTGCTCTGTCAGAGAAACTGATAGGGTTAAGTGGATA

Homology of Contig U35_24734 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g05220.1	397	3e-146	protein\|queuine tRNA-ribosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g17770.1	397	2e-166
Arabidopsis v10	None