barSeed - Barley Seed Development Database

Probe CUST_35051_PI390587928

Source Contig U35_24735

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35051_PI390587928	Hv_44K_v2	CTTGTAGTGATGTGTGTATACGTGATGTTCAAATTGGACACAAATACAGAGATCAATACA	427	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374038	3529	2e-24	1992 - 2051	100	60 / 60	plus	ABC08422 ABC35436
MLOC	MLOC_37553.1	2026	3e-21	1 - 54	100	54 / 54	minus	ABC35436
JLOC1	JLOC1_24320.1	2132	8e-25	1976 - 2035	100	60 / 60	plus
Harvest21	ABC35436	514	3e-25	425 - 484	100	60 / 60	plus	ABC35436
Harvest35	U35_24735	517	3e-25	428 - 487	100	60 / 60	plus

Contig Sequence (517 bp)

>U35_24735 517 Hv_44K_v2
GAGGAGATGATCAGGGGGACAGTGATGATGATCATTCCGTGGTGTCAAGGGAGAAGGTCA
TTGGGAGGGTCAACTCATATCAGCTGGGGAAGCAAGTGTCCTTCAAGTGGACCACCGGCG
CCGGACCCCGGATCGTGTGCGTCAGGGACTACCCGCCGGAGCTCCAGCACCGGGCGCTGG
AGGAGGTGCACCTGTCGCCGAGGAGGGGCGGCAGGGCGACGTCGCGGTTCTCGTCGCCAC
AGAGGGGTGGCAGCCCGATGTCGAGAGGCTGTGAGCCGCTGACGCCGAGAGAGGCGTTCC
ATGCCACGCATCTGCAGCAGGGACTACTGATCAGTTTATGATGAACGAGCTATTCTTGTT
CATCAGTTGTGCATATGGTAGGGGAATAAAGTTATTGGGAGCAAAACGAAGTACTCCTTG
TGTAGATCTTGTAGTGATGTGTGTATACGTGATGTTCAAATTGGACACAAATACAGAGAT
CAATACAAATTCTTTCATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24735 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None