barSeed - Barley Seed Development Database

Probe CUST_35050_PI390587928

Source Contig U35_24737

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35050_PI390587928	Hv_44K_v2	TAAATACTACAGCAAATTTTTATACGGGCATTTTAGCAATGGCCACGATTTGGGGACAAA	512	GeneList: yellow MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.881	3.133	1.267	0.745	0.263	0.223
Raw	81.543	142.256	50.380	48.788	4.221	4.684

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20815.1	3057	2e-23	1102 - 1159	100	58 / 58	minus	ABC19065
MLOC	MLOC_20815.3	2752	2e-23	24 - 81	100	58 / 58	minus	ABC19065
MLOC	MLOC_20815.2	3294	2e-23	1102 - 1159	100	58 / 58	minus	ABC19065
MLOC	MLOC_20815.4	2133	3e-21	1 - 54	100	54 / 54	minus	ABC19065
JLOC1	JLOC1_14428.2	2567	1e-23	2193 - 2250	100	58 / 58	plus
JLOC1	JLOC1_14428.1	2454	1e-23	2080 - 2137	100	58 / 58	plus
Harvest21	ABC19065	586	3e-25	513 - 572	100	60 / 60	plus	ABC19065
Harvest35	U35_24737	586	3e-25	513 - 572	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_24737 586 Hv_44K_v2
GGTACTGCTTCACATGACTATAAAAGACATACTTGTCTGCTTCCTGGCATTCTTGCCCAC
CGGATGGGGAATACTGCTGATTGCGCAACCTTGCATACCTCTTTTTCGGGTCACGGGGCT
ATGGGGATCTGTCCGAGCCCTTGCGCGGGCATACGAGGTTATCATGGGGATGCTTCTCTT
CACGCCGATTACCGTCCTGTCATGGTTCCCCTTCGTCTCCGAGTTCCAGACGCGGATGCT
GTTCAACCAGGCGTTCAGTAGAGGGCTGCAGATATCCCGGATTCTCGGTGGTCAGAAGAA
GGAACGGGCCTCCAGCACCAAAGACTAACTCAGCTCTTTTGCCCAGTTGCATGCCATTTT
CAATATGGTGCTACTTCAGAATACGTAGGTTGTGAATATTCCAGGATATAGAACATTTCC
TGTGATTACAACTGTATACAAGTTGTGAAATAGTATATCTGCTAATTGCGATGCAAGGAA
TCGTAGTCGTCGGATACTGCCATTTTCTTGTGTAAATACTACAGCAAATTTTTATACGGG
CATTTTAGCAATGGCCACGATTTGGGGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_24737 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g03610.1	1908	1e-52	protein\|1,3-beta-glucan synthase component domain containing protein, expressed
Brachypodium v1_2	Bradi1g76617.1	1854	3e-56
Arabidopsis v10	None