- Probe CUST_35047_PI390587928
- Source Contig U35_36711
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35047_PI390587928 | Hv_44K_v2 | GTTGTGAAGATCAAGTCCAAGACACCTTTACCAGCTGCAAGACTTGGATCATCATGTAAG | 528 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.418 | 0.258 | 0.792 | 1.425 | 1.211 | 1.563 |
| Raw | 17.064 | 14.477 | 46.372 | 128.516 | 38.529 | 54.571 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355135 | 2441 | 2e-24 | 585 - 644 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_52584.5 | 821 | 2e-24 | 233 - 292 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_52584.6 | 1482 | 2e-24 | 894 - 953 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_52584.9 | 782 | 2e-24 | 197 - 256 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_52584.1 | 969 | 2e-24 | 211 - 270 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_52584.2 | 1277 | 2e-24 | 809 - 868 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_52584.10 | 1402 | 2e-24 | 817 - 876 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_52584.3 | 765 | 2e-24 | 210 - 269 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_52584.8 | 1587 | 2e-24 | 861 - 920 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_52584.7 | 766 | 2e-24 | 177 - 236 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_33709.9 | 1290 | 8e-25 | 599 - 658 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33709.8 | 1990 | 8e-25 | 598 - 657 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33709.7 | 1229 | 8e-25 | 538 - 597 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33709.6 | 1264 | 8e-25 | 533 - 592 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33709.5 | 1237 | 8e-25 | 506 - 565 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33709.4 | 1145 | 8e-25 | 454 - 513 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33709.3 | 1811 | 8e-25 | 419 - 478 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33709.2 | 1741 | 8e-25 | 349 - 408 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33709.1 | 902 | 8e-25 | 211 - 270 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31965 | 591 | 3e-25 | 529 - 588 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36711 | 591 | 3e-25 | 529 - 588 | 100 | 60 / 60 | plus |
Contig Sequence (591 bp)
>U35_36711 591 Hv_44K_v2 GCGGGCGCCGCCGCAGCGGGAGCCGGGGGCCTCCACGACCGCGGCCACTCCGTCACCGTG TCCGCCTCCGCGCCGCTCCGCCATCTCCTGTCCACCGCCGCCACGGGGCTCCTCTCCCGC AACCCCTTCCTCGCGCCGTGGCAAGGGGATTTCGCTATACTAAATTCTTTTGCATGCGCA TCTGCTCCACCCGCAAACCTGAGCAACCATGGCTCTGGTGGAAACTCAGATGATTCGAGA TGTTCCCCAGGATGTCTAGGCAGAAATTCAATTGCCAATGCTGCAGCTGCAGTTGGTCCT GCCGTGGTGAATATTTCTTGTATGCAAGAAAATGGATGGGTGCTAGAGAAGAGCATTGGA TCAGGGACTATAATAGATCCAGATGGGACCATATTGACATGTGCCCATGTTGTTGCAGAT TTTCAAAGCACAAAACCAGTTCTAAAGGGGAAGGTTAGTGTGAGTTTACAAGATGGTCGT GAATTTGAAGGCGTTGTTCTCAATTTTGACATCCACTCAGATATCGCTGTTGTGAAGATC AAGTCCAAGACACCTTTACCAGCTGCAAGACTTGGATCATCATGTAAGCTT
Homology of Contig U35_36711 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g14170.1 | 456 | 1e-60 | protein|OsDegp12 - Putative Deg protease homologue, expressed |
| Brachypodium v1_2 | Bradi4g20960.1 | 424 | 2e-80 | |
| Arabidopsis v10 | None |