barSeed - Barley Seed Development Database

Probe CUST_35042_PI390587928

Source Contig U35_36716

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35042_PI390587928	Hv_44K_v2	GTTGGAAAGCACAAATCTTCTGCACTACCCAGTGTGCCAGTTACTTCTGTGGAAAATGCT	319	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361911	3703	2e-24	1852 - 1911	100	60 / 60	plus	ABC18383
MLOC	MLOC_16145.1	3059	2e-24	1349 - 1408	100	60 / 60	plus	ABC18383
JLOC1	JLOC1_11103.2	2957	8e-25	789 - 848	100	60 / 60	plus
JLOC1	JLOC1_11103.1	3444	8e-25	1504 - 1563	100	60 / 60	plus
Harvest21	ABC31973	594	3e-25	320 - 379	100	60 / 60	plus
Harvest35	U35_36716	594	3e-25	320 - 379	100	60 / 60	plus

Contig Sequence (594 bp)

>U35_36716 594 Hv_44K_v2
GAAATCATCCTCTGAATTAATAACTTCACCCAAGGATTCTCTGGAGTTGGACCACTGCAG
TGGAAGTATTGAAATTGAGAAAAGCTACTCACCAGTCCAGGAACATACTGCTAACAATTC
TGGAACAACAAATAAGGAGAATCCCCCAGCAGTCTCTTTGCGAAGCTATTCTCCTTCCAA
TCTGATGTTATCTAGTGAAATAAAACAAACAAAAATGCTGTCTTCATCAAATGGTTTCTC
ATTCCCTGTCATGGCTCCACCGGTTGCTCACTCGCAGGCCCCTCCAACGCCTACTATGGC
ATCTCCACCTGCACTACATGTTGGAAAGCACAAATCTTCTGCACTACCCAGTGTGCCAGT
TACTTCTGTGGAAAATGCTCCATGGATTTTGAGACAAGTTTCAGAAGAAAGCTCAGTTTC
AGACAAGCACAACAAGAAGTTAAATGGAGAAATTCCACCGATTTCTTCCAAGGGTGCTGG
ACATGTTGCATCATTCACCAGTAACCCTGTAACCTTAAGTAATGGGCTAGCACATACATC
AAAATCAACTGCCTCTGCTGTTCTGGCTTCTGATGGATCGAACAACTCATTTTT

Homology of Contig U35_36716 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g07760.1	1073	2e-65
Arabidopsis v10	None