barSeed - Barley Seed Development Database

Probe CUST_35028_PI390587928

Source Contig U35_24743

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35028_PI390587928	Hv_44K_v2	AACATAGATCAGTAGAGCTTGTCGTTGATCGTGCCATCTCTACTCTGCTGTGAGTGTGAT	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362117	1393	2e-24	11 - 70	100	60 / 60	plus	ABC30693
MLOC	MLOC_64486.1	1470	2e-24	1330 - 1389	100	60 / 60	minus	ABC30693
MLOC	MLOC_64485.2	3469	2e-24	3296 - 3355	100	60 / 60	minus	ABC30693
JLOC1	JLOC1_42349.1	1500	8e-25	69 - 128	100	60 / 60	plus
Harvest35	U35_24743	611	3e-25	11 - 70	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_24743 611 Hv_44K_v2
AGATCAAACCAACATAGATCAGTAGAGCTTGTCGTTGATCGTGCCATCTCTACTCTGCTG
TGAGTGTGATCGAGCTAGTGATCAAGCGCGAGAAGAGAAGATGGCGTTGCACTGGAGCGG
CGGCCTCGCGGTCGCCGTCGCGGCGGCGCTGGCCGTGTCCACGCTCTTCCCGGCGGGCGC
TGCGGGTCACCCGCCGCTCCCAGTCCCAGGCCCGTTGATCCCGCAGTTCTACGAGCACAC
GTGCCCGCAGATGCTGGAGGTGGTGGGTGCCATCGTGGTCAAGGAGCACGCCAAGGACCC
GCGCATGGCGGCGTCCCTGCTCCGGCTGCACTTCCACGACTGCTTCGTGCAGGGGTGCGA
CGCGTCGGTGCTGCTCGACGCCGACGGCAGCGGCAGGTTCACCACCGAGAAGCGGTCCAA
CCCGAACCGCGACTCGCTGAGGGGCTACGAGGTCATCGACGAGATCAAGGCCGCCCTGGA
GCACGCCTGCCCCCACACCGTCTCCTGCGCCGACATCGCCGCCGTCGCCGCCAGGGACTC
CACCGTGCTGACTGGCGGGCCGGGCTGGGAGGTGCCACTGGGGAGGAGGGACTCGCTTAC
GCCAGCTTGAG

Homology of Contig U35_24743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g34630.1	346	2e-75	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g10070.1	335	1e-76
Arabidopsis v10	AT5G66390.1	336	6e-55	Peroxidase superfamily protein \| chr5:26516063-26517329 REVERSE LENGTH=336