barSeed - Barley Seed Development Database

Probe CUST_35024_PI390587928

Source Contig U35_24747

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35024_PI390587928	Hv_44K_v2	GAAACAAGACTTGGATACTTGTTTGCTGCCGTGTCAGCTGTATTCGCAAGACCATTTTTT	677	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.162	1.957	1.500	0.822	0.273	0.312
Raw	1508.301	3944.013	2582.943	2301.068	257.687	322.350

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_34070.3	2925	4e-23	2006 - 2066	98	60 / 61	plus
JLOC1	JLOC1_34070.2	3153	4e-23	2234 - 2294	98	60 / 61	plus
JLOC1	JLOC1_34070.1	3205	4e-23	2286 - 2346	98	60 / 61	plus
Harvest21	ABC21006	737	3e-25	678 - 737	100	60 / 60	plus	ABC21006
Harvest35	U35_24747	737	3e-25	678 - 737	100	60 / 60	plus

Contig Sequence (737 bp)

>U35_24747 737 Hv_44K_v2
GTAGGAATGGACTATGGTGAGTGGACCGACAGCAGCCGTGGGACGTACAACAAAGTGGGA
CGGCGTTTCCCGTTGCACCACTNCAGNTGTTTCCTGGAGCATGGACCGCCGTCCTGTTGT
CGCTCGACAGCCCGGGGTTCTGGAACGTGCGGACGGAGAATCTGGACACCTGGTACCTCG
GCCAGGAGACGTACATCAGGGTGGTGGATCCTGACGGAGGCTATAACGTGACTGAATCGG
TGCTACCAGACAACGCCCTCTTCTGTGGCCTCCTCAAGGAAAAACAAAAGGCTCAGAAGC
CTCATGGGTCGTCGTCGAGCTCGGCTTCCCCCGCGGTAAGACAGAGCCGCTACCTGCTGG
CTGTCTTGGTGTCGCTGGTCATGTTGTCGGTCGTCGGACACTGAAGTGAAGTGATCTGCT
GCTATTTGTGAGTTATTAGGAAATTGAGAATGTAGGTTGAGTTTGCGGGGTGATCCGTCG
ATTGGGTGGAGAGGTCCTGCCATTATTTGCGCATCGGCGAATTTGTCGAAACTTGTTAAC
AGAGTTGTGTGCGCGTCGAATTGTTTGCGTGGTACTTACTTACTGCTGCCCGTGACCCCG
CAATTGGGGGCATTGCGGGGTCACCGTGCCGCCACCTTGAGGATGATGATTTTTAGCTAG
CCCTGTCCTGTTCCTGTGAAACAAGACTTGGATACTTGTTTGCTGCCGTGTCAGCTGTAT
TCGCAAGACCATTTTTT

Homology of Contig U35_24747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None