barSeed - Barley Seed Development Database

Probe CUST_35021_PI390587928

Source Contig U35_36720

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35021_PI390587928	Hv_44K_v2	ATTTGATAAGCATATGGCCTGGGTCAGAGGTCTGTACAAGCAGATGGAGCCATATGTATC	580	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.685	1.030	1.754	1.736	0.881	0.676
Raw	74.736	174.089	264.840	406.458	74.468	61.529

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359393	1735	2e-24	1343 - 1402	100	60 / 60	plus	None
MLOC	MLOC_77855.1	1290	2e-24	362 - 421	100	60 / 60	minus	None
JLOC1	JLOC1_51900.1	1297	8e-25	472 - 531	100	60 / 60	minus
Harvest21	ABC31982	650	3e-25	581 - 640	100	60 / 60	plus
Harvest35	U35_36720	650	3e-25	581 - 640	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_36720 650 Hv_44K_v2
GCTGGAAGCTCCGGCTCGTGCGCGTGCCGGAGTCGGTCACGGTGTTCACCATCCGTCGGT
CACGAAACCAATCTGCCACCCATCTCATAGCCAAATGGCAAGAAATCGCGCCCGCCCTGC
CCCCCGACCTCTACCTACGGGTCGTCGTGCATAACCAGGACGCTCAGTTTCAGTCCCTGT
TTCTTGGCCGATGCGACCGCCTCGTCCGCCTCATGCGAGCTCGCTTCTCTGATCTTGGAA
TGGTTCGAGCAGACTGCGAGGAGATCACCTGGATCCAATCCACCGTGTACTTCGCGTTCC
GCTCCAGCTCCAAGCCATTAGAGCTGCTCTTGGACAGGGGTACCAAGCCAGACAGCTATG
TGAAAGCTAAATCTGACTACGTGCAAGAAGCAATCCCATGGCACGTCTGGGAGAGCACAT
GGACATGGCTGGCGAAGCAGGAAGCCGGGATCCTCATCCTAGATCCCTACGGCGGCGGAA
TGGGAAGCGTCGCGCCGTCTGCAACGCCTTTTCCCCACCGGAAGGGGAATCTATACAACC
TCCAATACTACTCCTCCTGGTCTGAGAATGGAACAGATGCATTTGATAAGCATATGGCCT
GGGTCAGAGGTCTGTACAAGCAGATGGAGCCATATGTATCCAAGAACCCA

Homology of Contig U35_36720 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35550.1	1936	4e-111	protein\|retrotransposon protein, putative, Ty1-copia subclass, expressed
Brachypodium v1_2	Bradi1g38270.1	523	1e-99
Arabidopsis v10	AT4G20860.1	530	3e-58	FAD-binding Berberine family protein \| chr4:11172726-11174318 FORWARD LENGTH=530