barSeed - Barley Seed Development Database

Probe CUST_35020_PI390587928

Source Contig U35_36721

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35020_PI390587928	Hv_44K_v2	CAGGTTTACAGATCTGAATTGACCATTGAGTTATTATGTTGGATGGTACTGATCTTATCA	524	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.263	2.568	0.993	1.001	0.391	0.357
Raw	1363.980	735.268	259.403	382.127	60.038	57.950

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7640.1	1192	2e-24	1052 - 1111	100	60 / 60	plus	None
Harvest21	ABC31983	625	3e-25	525 - 584	100	60 / 60	plus
Harvest35	U35_36721	625	3e-25	525 - 584	100	60 / 60	plus

Contig Sequence (625 bp)

>U35_36721 625 Hv_44K_v2
TTTGAGGGCGGCACGAGGAGGCGGTGGCGGCAACCAAGATGAGCGTCTTCTTCGGCAAGG
CGGAGATGGAGGACGACAAGGAGCTGGCGCAGTTCAACCCGCCCGTCGATGGGGTGGATA
TGGAGGTGTGCGTGGTCGTGCGCCAGACGCCGCCGCCACCAGCGTGCATCAACGGGAACG
GGGCGGCCATGGTTAACAACCAGCGGCTGCAACAGCGGATATCGGTGGAGGTGAAGTCGG
GCGCCAAGACTGCGACGCTGGAGGTGAGCGACATGGATGCCGTCAAGGAGCTGCGGGCGG
AGCTGGGCACCGCGGCGCCGCACCTCCTCCTGCCCAACGACGGCGCCTACTTCTTCATCT
ACAAGCAGAATGTCATGGAGGAGGACCGCACGCTGCGCTGGCACGACGTCAAGACCGGCG
ACACCATCGAGATCTTCAACGGCAGGGTCACCGGTGGCGCTTGATTCATCACATACATCA
CATCTTCCGTCGATCAGGTTTACAGATTCGGTTCANAAAAGGATCAGGTTTACAGATCTG
AATTGACCATTGAGTTATTATGTTGGATGGTACTGATCTTATCATTTCTATCGTGTAAAT
TGGTGTAATGTTGAGTTATTAACGA

Homology of Contig U35_36721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None