barSeed - Barley Seed Development Database

Probe CUST_3501_PI390587928

Source Contig U35_32487

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3501_PI390587928	Hv_44K_v2	CGATTGCCGCCGTCCGCGACGACTCCAAGATCGTGCAGCTCCACTCCGAGCCCTCGCGCC	242	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366119	2948	2e-24	281 - 340	100	60 / 60	plus	ABC12611
MLOC	MLOC_75931.1	854	2e-24	702 - 761	100	60 / 60	minus	None
JLOC1	JLOC1_50650.2	2265	8e-25	96 - 155	100	60 / 60	plus
JLOC1	JLOC1_50650.1	1417	8e-25	94 - 153	100	60 / 60	plus
Harvest35	U35_32487	302	3e-25	243 - 302	100	60 / 60	plus

Contig Sequence (302 bp)

>U35_32487 302 Hv_44K_v2
CCCGGCTCGTGCGCGATCCGGCCGTGCTCCGACCTCGCCTAGATCGATGTCCTCCTGCAT
CTCCGTCGCGGCGGAGTGGGACCTCCTCTCCGACCGTTTCTACCGCCGCGTCACCATCTA
CTCCCCCCTCCCCTGGTCCTCCCCGGCCACCACCACCGCCTCCTCCTCCGGTGGCGGCAG
CTCCGGGGTCGGCCGCCTCGACCTCTCGACCCACATCGTCGCCGCCGCTCCGTTCGGCGG
CCCGATTGCCGCCGTCCGCGACGACTCCAAGATCGTGCAGCTCCACTCCGAGCCCTCGCG
CC

Homology of Contig U35_32487 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None