- Probe CUST_35017_PI390587928
- Source Contig U35_36724
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35017_PI390587928 | Hv_44K_v2 | AGCAAATTCAATTCCATTTACTTCAACGAGGGCTCCTCAGAGTCTGCTTTCCTTGCAGCT | 400 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.601 | 0.640 | 1.302 | 1.576 | 0.900 | 1.029 |
| Raw | 48.209 | 71.822 | 140.604 | 266.509 | 53.735 | 67.886 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_16422.1 | 1248 | 2e-24 | 488 - 547 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_11302.1 | 1326 | 8e-25 | 467 - 526 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31989 | 466 | 3e-25 | 401 - 460 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36724 | 466 | 3e-25 | 401 - 460 | 100 | 60 / 60 | plus |
Contig Sequence (466 bp)
>U35_36724 466 Hv_44K_v2 GGTCGTCTCTCCCATCTCCGCTCCACCCCGATTTCCGACCCGTCTCGCCCCTTTCGCCCG CCCGGTCTCTCCGCCGCCCGCGGGAGGCGATCGCCGGCGCAGGATGGCGGCCGCGGGTGC CGCGACGCCGATGGGCGCAGCGCCCATGGTGGGGCTGCTGTACGACGATAGGATGTGCGC GCACGCGACGCCTGACGGGGAGAAGCACCCGGAGAACCCCGAGCGGCTGCGCGCCATCCG GCGCAAGCTCGACGCCGAGGGCATCGCGTCCAGGTGTGTGGACTTGAAGGCAAAGGAAGC CAAGGAAAAATATATAGCCTCTGTCCATACCCCAAACCATATAAAACTGATAAGGGATAT CAGCTCGAAGGACTATGATTACCGTCGGAACAAGACTGCTAGCAAATTCAATTCCATTTA CTTCAACGAGGGCTCCTCAGAGTCTGCTTTCCTTGCAGCTGGCTCT
Homology of Contig U35_36724 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g41090.3 | 512 | 3e-53 | protein|histone deacetylase, putative, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |