barSeed - Barley Seed Development Database

Probe CUST_35007_PI390587928

Source Contig U35_12774

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35007_PI390587928	Hv_44K_v2	AACCAACAGATTTTAACCTTCTTTTTGCTGGGGATGTTGAAGATCACTTCCTTTTTGGAA	504	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375730	1349	2e-24	64 - 123	100	60 / 60	plus	None
MLOC	MLOC_77182.1	1180	2e-24	630 - 689	100	60 / 60	plus	None
JLOC1	JLOC1_51478.1	778	8e-25	632 - 691	100	60 / 60	plus
Harvest21	ABC26563	573	3e-25	505 - 564	100	60 / 60	plus
Harvest35	U35_12774	573	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_12774 573 Hv_44K_v2
GAACAGGTGAACAAATTAAGGGAGCTTCTGATGATCCTTTTGTTGATGTCAAAGGAAAGC
TGAAGGACCACTGGCAAAAAATCCTCTCTGATGACTTGAATTATAGATCGAGGTTCTTCT
CTCTTTGCAATAGCTATCGTGACATAATGCATTGTAATAAGAAGCCATTTTATCTTAAGG
GTAGTAAGGTGGATTCCAGTACTATGGACGCATATCTTATGCATGCTTTGAGCCATGTTC
ATAGGACAAGAGATGTTGTCATTAAGAATGATGCGAACCTTAGGAATGATGCTAACTCAG
ATGTTTTGGGTGATGACTCATACCGTGATCAGGGTTTTACACGTCCGAAGGTTCTTTTCT
TGCTACCTCTCAAAAGCATTGCACGACGTGTTGTGAAGAGATTAATCCAATTATCTCCGC
TGGCACAAAAGGATAATTCTATGGGACAATTCAAGAAAGAGTTCGGTGACTCAGATGATG
AACTGGAGGAGCCAAATAGTTCAAAACCAACAGATTTTAACCTTCTTTTTGCTGGGGATG
TTGAAGATCACTTCCTTTTTGGAATAAAAATTT

Homology of Contig U35_12774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g22920.4	383	7e-90	protein\|digestive organ expansion factor, putative, expressed
Brachypodium v1_2	Bradi2g05445.2	568	4e-106
Arabidopsis v10	None