barSeed - Barley Seed Development Database

Probe CUST_35003_PI390587928

Source Contig U35_12776

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35003_PI390587928	Hv_44K_v2	CCATTGTAAGGGAAGCTAGGCTAGGGTAGGTGCAGGCAAATTTTGGTTAGATGATGATGT	776	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368079	2170	2e-24	829 - 888	100	60 / 60	plus	None
MLOC	AK249837.1	2160	2e-24	2038 - 2097	100	60 / 60	plus	None
MLOC	MLOC_69244.2	2271	2e-24	1454 - 1513	100	60 / 60	minus	None
MLOC	MLOC_69242.2	5797	2e-24	4982 - 5041	100	60 / 60	minus	ABC45603 ABC47595
MLOC	MLOC_69244.3	1326	2e-24	509 - 568	100	60 / 60	minus	None
MLOC	MLOC_69244.1	2567	2e-24	1749 - 1808	100	60 / 60	minus	ABC45603 ABC47595
MLOC	MLOC_69242.3	4961	2e-24	3229 - 3288	100	60 / 60	minus	ABC45603 ABC47595
JLOC1	JLOC1_45868.2	2158	8e-25	762 - 821	100	60 / 60	plus
JLOC1	JLOC1_45868.1	1993	8e-25	762 - 821	100	60 / 60	plus
Harvest21	ABC24518	843	3e-25	777 - 836	100	60 / 60	plus
Harvest35	U35_12776	843	3e-25	777 - 836	100	60 / 60	plus

Contig Sequence (843 bp)

>U35_12776 843 Hv_44K_v2
CTCCGACCCTCTGCCGCCGCCGCCGCCGCCGCCGCCTCCTCACTCTGGACGGCAAGCAGT
CGCTTCCTTCTCAGCGGCGTGGGCGGGAGGTCGAGCTCCGGGCATGGCGTGGGCGGCGCT
GAGGCCGGTGGTGAAGGCCTGCATCGGCGGCTCCCTCATCGGCATCACCATCTCCGACCG
CTACTTCTCCTTCGCCACCGTCCACGGCGGCTCCATGCGCCCCACCTTCGAAGGCAGCAC
AGACGGACGCGAGTACGCGCTGGTGAAGCGGAGCCCCCTCTACGACTACTGCCGCGGCGA
GGTCGTCGTCTTCGTGTCGCCGGTGGACCACCGGAGCCCGGCGATCAAGAGGCTCATCGG
GCTGCCCGGCGACTGGATCAGCGTCCGGGACAAGGAGGAGATCCGCAAGATTCCGGAGGG
CCACTGCTGGGTCGAAGGGGACAATGGCAGCGCAAGCTGGGACTCCAGATCCTACGGCCC
CGTTCCGCTTGGTCTAGTGCAGGGGAGGGTGACGCACGTGGTGTGGCCGCCCGGCAAGAT
GGGCCGCGTCGACAAGAAGGTGCCGCCGGAAGGAAGGGTCATGCCGCAGCGAAATCTCTA
GTCCAGTCCATCTCTCTTCCTTCCTGGGTTGCTTTGTCCCGCAGTTTTGTTTGTTCTCGC
TGGACATCATGTAACACATCATGCAGCAGGGAGACATTGCGTCCCTCCGCCTTCCGAATG
TAGCACATCAATAGATAGTTTCTTATGTAACCTTGGCTGTATAAGACTTGATCCATCCAT
TGTAAGGGAAGCTAGGCTAGGGTAGGTGCAGGCAAATTTTGGTTAGATGATGATGTGTGA
TGC

Homology of Contig U35_12776 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g08340.1	165	1e-59	protein\|OsSigP3 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed
Brachypodium v1_2	Bradi5g00590.1	167	4e-73
Arabidopsis v10	None