- Probe CUST_35002_PI390587928
- Source Contig U35_12777
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_35002_PI390587928 | Hv_44K_v2 | TCCGCTCCAGCACTGAAGGAAGATGCTGAAACTGCGGAGGATGCTAATGCGGAGCAGAAG | 395 | GeneList: blue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.585 | 1.417 | 1.113 | 0.593 | 0.186 | 0.173 |
Raw | 7094.743 | 9778.853 | 6797.253 | 5640.393 | 627.546 | 641.871 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_3540.1 | 969 | 2e-24 | 28 - 87 | 100 | 60 / 60 | minus | ABC26236 |
JLOC1 | JLOC1_2128.1 | 4175 | 8e-25 | 878 - 937 | 100 | 60 / 60 | plus | |
Harvest21 | ABC26236 | 512 | 3e-25 | 396 - 455 | 100 | 60 / 60 | plus | ABC26236 |
Harvest21 | ABC29677 | 369 | 1e-23 | 292 - 351 | 98 | 59 / 60 | plus | |
Harvest35 | U35_12777 | 512 | 3e-25 | 396 - 455 | 100 | 60 / 60 | plus | |
Harvest35 | U35_30029 | 369 | 1e-23 | 292 - 351 | 98 | 59 / 60 | plus |
Contig Sequence (512 bp)
>U35_12777 512 Hv_44K_v2 GGGCCGCCGAGGACCAGGACCAGGACCACGACCAGGACGAGCCACCCGCCTCCGCCGCCG CATCCGAGCTCGAGGCCGGTAGGTCTGAGGCCAGCGGCGATCTCGACGACGTCGACCTCG ATTTCGACTTCAGCAAGTCCAAGAAGAAAAAGAAGAAGGGCAAGGGAGCTCGCCCGTCCG CCGAGGAAGAAGACGACGAGGATGAGGCTGCTGCTGCCCCAGCTGCTGCCGAGGAAGAGG ATGAGCAGGAGGCTGCCGCCAAGAAATCCAAGAAGAAAAAGAAGAAGAGCGGAAGGACAG CACAGGAAGAGGAAGATTTGGACAAGCTTCTTGCCGAGCTCGGTGAAGGCCCAACACCGG CACCGGACAAGGAGAAACCATCCCAGGCACCGCCTTCCGCTCCAGCACTGAAGGAAGATG CTGAAACTGCGGAGGATGCTAATGCGGAGCAGAAGGGCCGGGGAAGGAGAGGTAGAGTCC GCTGCAGCCAAGAAGAAAAAAAAAAAAAAAAA
Homology of Contig U35_12777 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |