barSeed - Barley Seed Development Database

Probe CUST_34_PI415269222

Source Contig TA40152_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34_PI415269222	Hv_44K_v2	ACTTGTTCTACTTGTACACCACACCAACCATGGATTGAGAGGAATGTTTCTGCTTCAGCG	1921	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.064	3.430	2.547	0.723	0.110	0.133
Raw	460.356	1182.270	749.714	348.668	17.560	23.937

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362212	2907	3e-22	2789 - 2844	100	56 / 56	plus	ABC07541 ABC07542 ABC08486
MLOC	AK360248	1861	3e-22	1801 - 1856	100	56 / 56	plus	ABC07541 ABC07542 ABC08486
MLOC	AK248564.1	1818	3e-22	1758 - 1813	100	56 / 56	plus	ABC07541 ABC07542 ABC08486
MLOC	MLOC_23774.1	699	3e-22	163 - 218	100	56 / 56	minus	ABC08486
JLOC1	JLOC1_16402.1	1913	1e-22	1793 - 1848	100	56 / 56	plus
Harvest21	ABC08486	2001	5e-23	1924 - 1979	100	56 / 56	plus	ABC08486
Harvest35	U35_15153	2001	5e-23	1924 - 1979	100	56 / 56	plus

Contig Sequence (1988 bp)

>TA40152_4513 1988 Hv_44K_v2
CTGCTGCCGCGCCTCACTCACTCTACGCCTCTACGCTCTGACCAACGCCTGCGTCGTGCT
CTTCATGATCCAGAGCGCCGACCGCCTCATCCTCTGCCTCGGCTGCTTCTGGATCAAGCT
CAGGGGAATCAAGCCCGTCGCCAACGCCGCCGCCGCCGGCAAAGACGACGTCGAGGCCGG
CGCCCAGGAGGAGGAGTTCCCCATGGTGCTCGTCCAGATTCCAATGTGCAACGAGAAGGA
GGTGTATCAGCAATCCATTGGAGCTGTCTGCAACCTGGACTGGCCGAGATCGAATTTCTT
GGTGCAGGTGCTTGACGATTCTGATGATGCTGCGACTTCAGCTCTCATCAGAGAGGAGGT
TGAGAAATGGCAACGGGAGGGTGTCCGGATATTGTACCGACACCGGGTGATACGTGATGG
CTACAAGGCTGGAAATCTCAAGTCTGCCATGAACTGCAGCTACGTGAAAGATTATGAATT
TGTTGTTATCTTTGATGCCGATTTCCAACCACAAGAAGATTTTCTGAAGCGAACTGTGCC
CCATTTCAAGGGCAAAGAGGATGTTGGACTAGTTCAAGCAAGGTGGTCTTTTGTAAACAA
GGATGAGAACTTGTTAACCAGGCTGCAAAACATAAATCTGTGCTTCCACTTTGAGGTGGA
ACAGCAGGTTAATGGGGCATTCCTCAATTTTTTCGGGTTCAACGGAACCGCGGGAGTGTG
GAGAATTAAGGCACTCGAGGACTCTGGAGGATGGATGGAGAGAACGACAGTTGAAGACAT
GGATATTGCTGTCCGAGCACATCTAAAGGGATGGAAGTTTCTGTATCTTAACGATGTTGA
GTGCCAGTGTGAATTGCCGGAGTCATATGAAGCATACAGAAAACAGCAACATCGATGGCA
TTCTGGTCCGATGCAGTTGTTTAGACTCTGCTTTGTGGACATTATCAAATCAAAGATTGG
ATTCTGGAAGAAATTCAACCTGATATTCCTTTTCTTTCTCCTCCGAAAACTTATTCTGCC
CTTCTATTCATTCACTCTCTTCTGCGTCATACTTCCAATGACAATGTTTGCTCCTGAAGC
AGAGCTACCTGCTTGGGTGGTGTGCTACATTCCAGCAACCATGTCCTTGCTTAACATCCT
CCCAGCCCCAAAGTCCTTCCCATTCATCGTTCCCTACCTTCTGTTTGAGAACACCATGTC
AGTGACCAAGTTCAACGCCATGATCTCCGGCTTGTTCCAGCTCGGGAGCGCCTACGAGTG
GGTCGTCACCAAGAAATCAGGCCGTTCTTCGGAGGGCGATCTCGTCGCCCTCGTCGAGAA
CGAGAAGCCATCCAAGCAGCAGAGAGTAGGGTCCGCGCCGAACCTCGACTCCCTAGCAGC
AAAGGAGGAACTGTACCCGAAAGCGGATCCCAAACCCAAAAAGAAGAAACACAATAGGTT
ATACAGGAAAGAACTAGCACTCTCCTTCCTCCTCTTGACAGCAGCAGCTCGCAGCCTGCT
GTCGGTTCAGGGCATACATTTCTACTTCCTTCTGTTCCAGGGGGTGTCGTTCCTGGTCGT
CGGGCTCGACCTCATCGGCGAGCAGGTCGAGTGATGAGGATAGGATACAGCAAGCAGTAT
AATGGATTTTTCTCTTTCTCATTTGATAAAGCGCGTGGAATCATGCCGCCGACGCCCGGT
TTGAAGCGCGAGAGGAGGCTCTGGCTGATTGATCATCAGAGAGGCTGAAATGAAAATGTT
GGGGTTGTAGATATATGGCTTGGGACTCGGCCTGTGAGGTCCCAATTCTTTTGTAAGAAG
AACAGATCGGTCTAGATTGGGGTTAATTCTCTTCTTCTTTGACAGTTTACCTTCAAATGG
AGTGATACTGTTGTCATCGCATCATCATCTGTAATGTACTTTGGAATGCATAGTGAGTGA
TACTTGTTCTACTTGTACACCACACCAACCATGGATTGAGAGGAATGTTTCTGCTTCAGC
GGCCGCCA

Homology of Contig TA40152_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g56130.1	691	protein\|CSLC1 - cellulose synthase-like family C, expressed
Brachypodium v1_2	Bradi2g50967.1	687
Arabidopsis v10	AT4G07960.1	699	\| Symbols: ATCSLC12, CSLC12 \| Cellulose-synthase-like C12 \| chr4:4802628-4805114 REVERSE LENGTH=699