barSeed - Barley Seed Development Database

Probe CUST_34997_PI390587928

Source Contig U35_48709

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34997_PI390587928	Hv_44K_v2	AGCTGCTCTGCCAATAGTATTTAACCGGTAATAGACACATAGAGAAACAGTCAATGTATA	329	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78180.1	2544	7e-23	428 - 487	98	59 / 60	plus	None
MLOC	MLOC_78180.2	2683	7e-23	428 - 487	98	59 / 60	plus	None
Harvest21	ABC50713	409	3e-25	330 - 389	100	60 / 60	plus
Harvest35	U35_48709	409	3e-25	330 - 389	100	60 / 60	plus

Contig Sequence (409 bp)

>U35_48709 409 Hv_44K_v2
ACTTCCATCACAATAGNGAAANAGTGAGTACATCGTGTTTTGGAGAGCCTTAACTTTAAA
GACACAGTAGGACTATTGGATGCTCTGGCGCTGATAGTGATTGATCAATGATTGCTATCA
AAAAATGTGGAAATAAAGCTGAAGCAATAAGTAGGACTACTGGCCATAGCTAAAAAAACA
TGGCTAGGCTTTAGGCGATAGCAAAACACACCTACCGCTTAATGTGCACATATTTGCGCT
TAAGCATGTGCTTTGGTTAGAAAAGCGCATGGCAGTGGCAAAATGCACAATTAACGCCCA
ATGTTTTTAAAAAAAAAAGGAAAATGAACAGCTGCTCTGCCAATAGTATTTAACCGGTAA
TAGACACATAGAGAAACAGTCAATGTATATATGTAAATAGATGAAGAAG

Homology of Contig U35_48709 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None