barSeed - Barley Seed Development Database

Probe CUST_34996_PI390587928

Source Contig U35_24751

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34996_PI390587928	Hv_44K_v2	GAGGAGGACGGACAACGACGTCAAGAACCACTGGAACACCAAGCTCAAGAAGCGCCTCGT	388	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67874.1	1353	2e-24	700 - 759	100	60 / 60	minus	None
JLOC1	JLOC1_44854.1	1390	8e-25	547 - 606	100	60 / 60	plus
Harvest35	U35_24751	615	3e-25	389 - 448	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_24751 615 Hv_44K_v2
AGCACGGCCAGTCGTACGTCCTCGTCCGGTCGCTTCAGTTGAGCCTCTCCGTGTCCTCCC
TTCCCCCGTTGTCTCGTCTCTTGTTGTCCGGGGCCATGGGGAGGGCGCCGTGCTGCGACA
GGGCGGCGGTGAACCGGGGCCCGTGGTCGCCGGAGGAGGACGACGCGCTGCGCGACTACA
TGCAGCGCCATGGCAACACCGGCAGCTGGATCACCCTCCCCGCCAAAGCCGGGCTCAAGA
GGTGCGGCAAGAGCTGCAGGCTGCGGTGGCTCAACTACCTGCGCCCGGACATCCGCCACG
GCGGCTTCACCGACGAGGAGGACGCCATCATCTACTCCCTCTACAGCCAGCTCGGCAGCA
AGTGGTCGCTGATAGCGTCGCAGCTGGAGAGGAGGACGGACAACGACGTCAAGAACCACT
GGAACACCAAGCTCAAGAAGCGCCTCGTCGCCGCGGCCGCCGCCTTCCCGGCCGCCCCCT
CCTCCCGCCGCCCCCCGTCCTTCACTCCGGCCGCAGCGCACGCGCACGCGCACCCGTCGC
CGCTGCTCCCGCTCCCGCGCCGACCGTGAAGGCCGAGACGTACACCTACGACGACTTCCT
GGCGCCGACGGCCGG

Homology of Contig U35_24751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g09590.1	265	1e-71	protein\|myb-like DNA-binding domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g05740.1	240	5e-77
Arabidopsis v10	AT2G36890.1	298	6e-62	\| Symbols: RAX2, MYB38, ATMYB38, BIT1 \| Duplicated homeodomain-like superfamily protein \| chr2:15485821-15487245 FORWARD LENGTH=298