- Probe CUST_34995_PI390587928
- Source Contig U35_24752
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34995_PI390587928 | Hv_44K_v2 | TGTCCTGAGGGTATTCTCAAACAGATTTTCCAAGGAAATACTACACTTGCAAAAGGATAT | 780 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.565 | 1.375 | 1.189 | 0.682 | 0.603 | 0.584 |
| Raw | 19.292 | 24.461 | 19.518 | 17.787 | 4.004 | 5.123 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK359120 | 2197 | 2e-24 | 794 - 853 | 100 | 60 / 60 | plus | ABC49981 |
| MLOC | MLOC_69065.9 | 1885 | 2e-24 | 95 - 154 | 100 | 60 / 60 | plus | ABC49981 |
| MLOC | MLOC_69065.10 | 2025 | 2e-24 | 95 - 154 | 100 | 60 / 60 | plus | ABC49981 |
| MLOC | MLOC_69065.1 | 1519 | 2e-24 | 1000 - 1059 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_69065.7 | 1227 | 2e-24 | 619 - 678 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_69065.4 | 1894 | 2e-24 | 613 - 672 | 100 | 60 / 60 | plus | ABC49981 |
| MLOC | MLOC_69065.6 | 2289 | 2e-24 | 917 - 976 | 100 | 60 / 60 | plus | ABC49981 |
| MLOC | MLOC_69065.3 | 2297 | 2e-24 | 716 - 775 | 100 | 60 / 60 | plus | ABC49981 |
| MLOC | MLOC_69065.2 | 2711 | 2e-24 | 1315 - 1374 | 100 | 60 / 60 | plus | ABC49981 |
| MLOC | MLOC_69065.8 | 2012 | 2e-24 | 402 - 461 | 100 | 60 / 60 | plus | ABC49981 |
| MLOC | MLOC_69065.5 | 1920 | 2e-24 | 762 - 821 | 100 | 60 / 60 | plus | ABC49981 |
| JLOC1 | JLOC1_45752.4 | 2162 | 8e-25 | 571 - 630 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45752.3 | 2159 | 8e-25 | 568 - 627 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45752.2 | 1980 | 8e-25 | 603 - 662 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45752.1 | 2149 | 8e-25 | 772 - 831 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20446 | 843 | 3e-25 | 781 - 840 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24752 | 843 | 3e-25 | 781 - 840 | 100 | 60 / 60 | plus |
Contig Sequence (843 bp)
>U35_24752 843 Hv_44K_v2 GGCACAAAACACTATGGAGGCGTCGTCGTCAGCGGCGGCGGTGCGCGAGCAGAAGCGACA GCGCGAGGGAGGCGCGGTTCCATCGATGGCGGCGGGGAAGGCGAAGTACAAGTACCTGTC TATCGCCGACGCTCTTAAGGCCCCCGGATTCCGAGTCTGCATCTTCGCCACCGTCATCGA GATCGGCGCCGCCTTCCGCAGCCGCGGAACCGATTTCACTCTTACATTGAGGATAGCTGA TCAATCTCGTACATCTGGTATCTCCGTGACTTTCTTTGCTAACAACCCTGGACTACTGCC ATGTGTTAGGTCAAGCGGAGATGTCATCAGTCTCCATAATGTTGAGATAAAATTGCTTCA TGGAGAATACTTTGTAACTTTTAACAAAAGGCTTTCTTCGTTTGCACTATTTGGAGGGAT GGTATCTACAGAGTTCACGCCTTACCAGATTTCTATGAAACATCATGGAAGCGAACTTGA CAATCAAATTTTAACCCAGATGAGACTGTGGCTTGTGTATCATCCTCCAGGTCTGAAAGA TCTTGAATTGCAGCTATGGAATATAAAGTCTGATTCTACTTTTGATCTTGTATGCAAGGT CCTTCATGTCTGTCAAGCTCCCAGTGGCGAATGGATTTTTTATGTCTGGGATGGAACTGA TACTCCTGCAACTGAGCTTCAGACACTTTTGGACACGGAAGCAGTTACACCAACCCCTCT GCATCCTGAAGAAGTGCCGCTACCCAGGGAGGTTTTATGCACGCTGCCTTGTGTTGGAAC TGTCCTGAGGGTATTCTCAAACAGATTTTCCAAGGAAATACTACACTTGCAAAAGGATAT TTA
Homology of Contig U35_24752 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g39280.1 | 481 | 7e-130 | protein|ATPOT1, putative, expressed |
| Brachypodium v1_2 | Bradi5g12880.1 | 487 | 1e-146 | |
| Arabidopsis v10 | None |