barSeed - Barley Seed Development Database

Probe CUST_3498_PI390587928

Source Contig U35_32489

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3498_PI390587928	Hv_44K_v2	GGCACTGGATCAACTTCATCCAGAGATAACACACATGAGATTACCTTACCACAATTCTCG	325	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69715.2	4158	2e-24	3788 - 3847	100	60 / 60	minus	ABC29973
MLOC	MLOC_69715.4	4264	2e-24	3885 - 3944	100	60 / 60	minus	ABC29973
MLOC	MLOC_69715.5	4101	2e-24	3726 - 3785	100	60 / 60	minus	ABC29973
MLOC	MLOC_69715.3	4274	2e-24	3887 - 3946	100	60 / 60	minus	ABC29973
MLOC	MLOC_69715.1	4314	2e-24	3935 - 3994	100	60 / 60	minus	ABC29973
JLOC1	JLOC1_46216.2	4082	8e-25	295 - 354	100	60 / 60	plus
JLOC1	JLOC1_46216.1	4190	8e-25	295 - 354	100	60 / 60	plus
Harvest35	U35_32489	385	3e-25	326 - 385	100	60 / 60	plus

Contig Sequence (385 bp)

>U35_32489 385 Hv_44K_v2
CTCTTCCCGCGGCTCTAAGCCCTAGAACACCCCTTGCTTTTCGTCGCTGCTCCCCCCGCC
GGTGATGGCCGCGCCGCCGGAGACGACGGGCGCGCCGTCCCCGCCGGAAGGGGAGGACAA
GGGAAACGCGGGCGTCGAGGTCTGCTGCTTCGAGCAATCTGCAGAGGACTTCTCCAGAGC
GGTACGCGCCATCTCGGAGCTCGCCGCCGGCGAGCCCGAGCCCGGCTTCCCCGACGCCGA
GGCGGAACGGCTCGCCTCCTCGATAACGTTCCTCAGAGAATGGAGGCATTTTAATTATGA
GCCAAAAGGTGTAAGTTTTACTCACGGCACTGGATCAACTTCATCCAGAGATAACACACA
TGAGATTACCTTACCACAATTCTCG

Homology of Contig U35_32489 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g55477.1	1198	1e-52
Arabidopsis v10	None