- Probe CUST_34982_PI390587928
- Source Contig U35_36739
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34982_PI390587928 | Hv_44K_v2 | GCGACTTGTGCTTTCTGTAGTAATTAAGGCCCTGTTTGGAACCACTCAGATTATATAATC | 156 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.783 | 2.145 | 1.318 | 0.758 | 0.332 | 0.363 |
| Raw | 2710.180 | 5165.457 | 2683.577 | 2306.457 | 385.123 | 450.196 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC32018 | 307 | 3e-25 | 157 - 216 | 100 | 60 / 60 | plus | ABC32018 |
| Harvest35 | U35_36739 | 307 | 3e-25 | 157 - 216 | 100 | 60 / 60 | plus |
Contig Sequence (307 bp)
>U35_36739 307 Hv_44K_v2 GCAAGAGGGAAGGGAGGAAAGCAAAATCTAAGGAAGCAGTCCAGCATGCTATCAAGCTAG TCAAAGCGAGCAAGAGACTACGGCTCCTCTAGAACCGACCCTAAGCAGGACGCCTTTCTA TGTTTGCTCGTATATTTAGAGGAAAATGGTGGTGGAGCGACTTGTGCTTTCTGTAGTAAT TAAGGCCCTGTTTGGAACCACTCAGATTATATAATCTGATTTTTATAATCTATTATGTCT TCAAACATGACAAATTATATTGCAGTTTATAAAAACTAGATGTCCAGATTAAAAAAAAAA AAAAAAA
Homology of Contig U35_36739 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |