barSeed - Barley Seed Development Database

Probe CUST_34981_PI390587928

Source Contig U35_12781

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34981_PI390587928	Hv_44K_v2	ATTTATTCACTACAAGTGGCTTGCAACTCGAGGTGTGGACGAAGCATCTATATTGAAGGC	408	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56157.1	3077	2e-24	1138 - 1197	100	60 / 60	minus	None
MLOC	MLOC_56157.2	3378	2e-24	1138 - 1197	100	60 / 60	minus	None
MLOC	MLOC_56157.3	1857	2e-24	432 - 491	100	60 / 60	minus	None
JLOC1	JLOC1_36300.3	2856	8e-25	1584 - 1643	100	60 / 60	plus
JLOC1	JLOC1_36300.2	3031	8e-25	1759 - 1818	100	60 / 60	plus
JLOC1	JLOC1_36300.1	2623	8e-25	1351 - 1410	100	60 / 60	plus
Harvest21	ABC25593	954	3e-25	409 - 468	100	60 / 60	plus
Harvest35	U35_12781	956	3e-25	409 - 468	100	60 / 60	plus

Contig Sequence (956 bp)

>U35_12781 956 Hv_44K_v2
CGCAAAGCCAGATCCAGATTGGGTAAAGAATACTACTATCTTCAGTAACTGTGATGCTAG
AAACAAAAGCATAGATTTCGACTTTGGTATGTTTGAGACAGTGTTATCAAACAAAGCTCC
AGGCCATAGATTCCTGAAGAAGTACTTGTATTGCCTTTGGTGGGGCTTACAAAATCTAAG
TTGCTATGGCCAGACTTTGAGTGTAAGTACCTATATTGGTGAGACATTGTATGCCATATT
CTTGGCGGTGCTTGGTCTAGTTTTGTTTGCCCATTTGATTGGGAATGTTCAGACCTACCT
ACAATCCATCACTGCAAGGGTTGAGGAGTGGAGAGTAAAGCAAAGAGATACCGAAGAGTG
GATGAAACATCGCCAACTTCCTCCTGAACTACGGGCAAGGGTGAGAAGATTTATTCACTA
CAAGTGGCTTGCAACTCGAGGTGTGGACGAAGCATCTATATTGAAGGCTCTGCCTGCGGA
TCTTCGCCGTGACATTAACCGCCACCTTTGCTTGGATCTTGTTCGCAGGGTGCCATTCTT
CTCGCAGATGGACGACCAACTCCTCGACGCCATCTGTGGGCGCCTCGTCTCGTCCCTGAG
CACCAAGGGCACGTACACCGTCCGCGAGGGCGACCCGGTGACCGAGATGCTCTTCATCAT
CCGCGGCAAGCTGGAGAGCTCCACCACCGACGGCGGCCGGACGGGCTTCTTCAACTCGAT
CATCCTCAAGTCCGGCGACTTCTGCGGTGAAGAACTTCTCGGATGGGCCCTCGTCCCCAG
GCCGACCGTCAACCTGCCGTCGTCCACCAGGACGGTGAAGGCGCTCGTCGAGGTGGAGGC
GTTCGCGCTCCAGGCCGAGGACCTCCGGTTTGTGGCCAGCCAGTTCAGGCGGCTCCACAG
CCGGAAGCTGCAACACACCTTCCGGTACTACTCCCACCACTGNGAGACTTGGGCGG

Homology of Contig U35_12781 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08850.1	686	0.0	protein\|cyclic nucleotide-gated ion channel 14, putative, expressed
Brachypodium v1_2	Bradi1g46970.1	687	0.0
Arabidopsis v10	AT2G24610.1	726	4e-163	\| Symbols: ATCNGC14, CNGC14 \| cyclic nucleotide-gated channel 14 \| chr2:10457105-10460351 FORWARD LENGTH=726