barSeed - Barley Seed Development Database

Probe CUST_34980_PI390587928

Source Contig U35_12782

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34980_PI390587928	Hv_44K_v2	CAATCATTGGGAATAAAGGGCTGCCCCAAGTTACTCCACTCCTATTCATTCTCTTCTATT	525	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57116.4	3205	7e-23	1622 - 1681	98	59 / 60	minus	ABC16128 ABC16774
MLOC	MLOC_57116.6	2946	7e-23	1361 - 1420	98	59 / 60	minus	None
MLOC	MLOC_57116.1	3355	7e-23	1770 - 1829	98	59 / 60	minus	ABC16128 ABC16774
MLOC	MLOC_57116.2	3481	7e-23	1896 - 1955	98	59 / 60	minus	ABC16128 ABC16774
MLOC	MLOC_57116.5	2825	7e-23	1239 - 1298	98	59 / 60	minus	None
MLOC	MLOC_57116.3	3268	7e-23	1682 - 1741	98	59 / 60	minus	ABC16128 ABC16774
MLOC	MLOC_57116.7	2446	7e-23	860 - 919	98	59 / 60	minus	None
JLOC1	JLOC1_36969.1	2420	4e-23	834 - 893	98	59 / 60	minus
JLOC1	JLOC1_36970.11	3375	4e-23	1528 - 1587	98	59 / 60	plus
JLOC1	JLOC1_36970.10	3499	4e-23	1528 - 1587	98	59 / 60	plus
JLOC1	JLOC1_36970.9	3484	4e-23	1528 - 1587	98	59 / 60	plus
JLOC1	JLOC1_36970.8	3361	4e-23	1528 - 1587	98	59 / 60	plus
JLOC1	JLOC1_36970.7	3320	4e-23	1528 - 1587	98	59 / 60	plus
JLOC1	JLOC1_36970.6	3380	4e-23	1528 - 1587	98	59 / 60	plus
JLOC1	JLOC1_36970.5	3479	4e-23	1528 - 1587	98	59 / 60	plus
JLOC1	JLOC1_36970.4	3474	4e-23	1528 - 1587	98	59 / 60	plus
JLOC1	JLOC1_36970.3	3482	4e-23	1528 - 1587	98	59 / 60	plus
JLOC1	JLOC1_36970.2	3257	4e-23	1528 - 1587	98	59 / 60	plus
JLOC1	JLOC1_36970.1	3504	4e-23	1528 - 1587	98	59 / 60	plus
Harvest21	ABC24239	584	1e-24	526 - 584	100	59 / 59	plus
Harvest35	U35_12782	585	3e-25	526 - 585	100	60 / 60	plus

Contig Sequence (585 bp)

>U35_12782 585 Hv_44K_v2
TTGGTTTTCTCTAATCTAACTAATCTGAAGGAGATGGTCATTGAAAATTGCTCTCCTCTA
CTGCTCGATCATCTCCTAATGCTAACATCTCTGGAATTGCTCGAGATATGTGGCTCAAGT
AATGTATTATCCTTGATTGAAAGTGTGAGTCATGTCCGATGTCAGCTACCTGTTAAAAAG
ATAAGTGTCAAGCGATGTGGTTGCAATGGTAAGGAATTGACACATCTGCTCTCACTTGTG
CCGGAGCTCACAGAAATGAGAATAGCGGGTTGTCAAGAGATAAAATGGCTGGGTGTGGCG
GGACAATCATCAGCATCTTCTTCTTCTGCTGCTGCTGAACAATTGCATCATGGGCAAATC
GTACAGCAGCAGCAGCAAGAGTCAAAAGAAGGGGTAGACGGAGTGCTGCTCTTGCCTCCT
CAGCTAAAGGTGTTAAACATCGAAGAGTTCCCAGGGCTGAGCTTGCTCTCCAGTTCGCTA
GAAAGTGACAAGGAAGGAGGTGGGCTCCAAGGTCTCCACTCCCTCCAATCATTGGGAATA
AAGGGCTGCCCCAAGTTACTCCACTCCTATTCATTCTCTTCTATT

Homology of Contig U35_12782 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None