barSeed - Barley Seed Development Database

Probe CUST_34943_PI390587928

Source Contig U35_24948

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34943_PI390587928	Hv_44K_v2	TTACGGAGCCAAGATCAATTGAAAAGAAACATTGATGACAATCTGAACTACAGGAAAACA	827	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.332	1.203	1.031	0.748	0.376	0.419
Raw	63.194	83.684	67.392	74.026	13.551	16.198

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10497.1	1807	2e-24	670 - 729	100	60 / 60	plus	None
JLOC1	JLOC1_6874.1	1713	8e-25	425 - 484	100	60 / 60	plus
Harvest21	ABC33498	490	3e-25	428 - 487	100	60 / 60	plus
Harvest35	U35_24948	890	3e-25	828 - 887	100	60 / 60	plus

Contig Sequence (890 bp)

>U35_24948 890 Hv_44K_v2
GTGTGATTTATGATGAATATGTGAAACTGGAGAAAGAGACTATACCTTTAGCACAGAAGG
ATTTGGAACAACTTTTGGCAGATGAATGTGAGAAGGCACAGATATCTGATGATCTTGTGA
GTGTTCTTGCTCAAGTTAAAATGGACAGGGATGGAGTGGAAGTCTTGTTACATCCAGTTG
ATACTATCGACAGGCATGTGCAAGAAATACAGGAGTTAGAACCACAAGTCAAAGATCTTG
AATATAAGCTTGATTCTCGTGGCCAAGGCGTTAGATCTGTCGACGAAATTCAGTTGGAGC
TGATCTCTGTGCAGAGGGCAAGGGACACATTGACTGGTGAAGTAGACGATCTCAGGGATC
AGCAAAAAATGCTTAGCGAGGATCTATCAAATGCTCAGATGCGTTGGCATGCTCTTAGGG
AAGAAAAACTAAGAGCCTCAAGTGTATTGCTGAAGTTCAAAAAGGCTGAAGAAGATTTAG
TACATTTTGCCGAGGAAAAGGAGCAACTGATCCTAGATCAGAAGCATTTAGAAGAAGCTC
TTGTTCCATTGTCAAAAGAGAGAGAAAGCTTGTTGCAAGAGTATAAAGCTTTGAAGGAAA
GGTTTGATCAGGAGTATGATCAGCTGGCAGAAAGAAAAAGGGGATTCCAGCAAGAAATCG
ATATACTTGGAACCCTTAACACACGCATCAAAGGGTACCTGGATTCAAAGAAAGTAGAGA
AGCTTAATGAATTTCAGGAAAGGCATACCCTATCCCTGTCTCAGTTACAGAAATGTGAGG
CAAGAAAGCAAGACATATCGGTTGAGCTTGACAAGAGCAAACAGCTATTACGGAGCCAAG
ATCAATTGAAAAGAAACATTGATGACAATCTGAACTACAGGAAAACAAAG

Homology of Contig U35_24948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g29464.1	1317	3e-134	protein\|RecF/RecN/SMC N terminal domain containing protein, expressed
Brachypodium v1_2	Bradi3g43737.1	1093	3e-155
Arabidopsis v10	AT2G31970.1	1316	2e-91	\| Symbols: RAD50, ATRAD50 \| DNA repair-recombination protein (RAD50) \| chr2:13600657-13608815 FORWARD LENGTH=1316