barSeed - Barley Seed Development Database

Probe CUST_34940_PI390587928

Source Contig U35_36921

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34940_PI390587928	Hv_44K_v2	AGCGCGGATGAATTTGCCAGTCTCTATGCATGCAAGATACTTGACTTATGGTTCATATGC	607	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13125.1	2819	7e-23	992 - 1051	98	59 / 60	minus	ABC15654
JLOC1	JLOC1_8853.1	2766	4e-23	993 - 1052	98	59 / 60	minus
Harvest21	ABC32408	670	3e-25	608 - 667	100	60 / 60	plus
Harvest35	U35_36921	670	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_36921 670 Hv_44K_v2
GCAACTTGTGAAATCAATCAGGTCTGGTGATGGTAAGAACATTTTGCATCAATGGGCCAG
GGCTAGTCTGCACTCTGTGATTATCGAACGGTTATCTGTGGAAGAACACCCCAAATGCCT
TTATTATAGTCTAAGGATCATATTTTCATGGAACGTGGAATGCCAGTTCAACAATGGAGA
AGATTGCAATACATTTTTATCCATCTGGGACAGATTAGTTCATTTGAACAGCACCGTGTC
ACATGCGAAAACCAGAGAAATAATCCTATGTTGCATGGGTATGTGCATGAAGCAGTTTGC
TAAATTGATGAGGGATGGTGTGTTACCGGAAGGTCTTAAAACGAGTGAGCTCTCTACTTC
CTCTGGGAGTATCCACAAAGGGAATAGATTGTCTGCAGCAATTATCAGCACAGACCTTTT
TGTCAGTCTTGTTAAGAAGCAAAGTGCACCATCTGAAACTGTGAATTCTCGTAGGGCTGC
CGCTGAAGCAATTATCGCTTCAGGTCTTCTTGAAGAGGCAAATTTTGTCAAAGCATGTGT
GTCCAACGCATACATTCCTTCGGAACAGGACAACGAATGCCATCTCGAGGAGAAATGCTT
GAAAGCTAGCGCGGATGAATTTGCCAGTCTCTATGCATGCAAGATACTTGACTTATGGTT
CATATGCATC

Homology of Contig U35_36921 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g07290.2	1587	9e-80	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g15920.1	2168	1e-103
Arabidopsis v10	None