- Probe CUST_34935_PI390587928
- Source Contig U35_36927
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34935_PI390587928 | Hv_44K_v2 | GAGTCCCGGAGAACGTGCAGAAATAATAACGGAGCACAAGGATTTCATGGTTTCAAAAAA | 216 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.058 | 0.261 | 0.929 | 1.627 | 1.287 | 1.915 |
| Raw | 24.370 | 172.250 | 547.122 | 1433.831 | 425.850 | 677.656 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_18403.1 | 771 | 9e-22 | 693 - 747 | 100 | 55 / 55 | plus | ABC32415 |
| JLOC1 | JLOC1_12738.1 | 776 | 5e-22 | 698 - 752 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC32415 | 287 | 3e-25 | 217 - 276 | 100 | 60 / 60 | plus | ABC32415 |
| Harvest35 | U35_36927 | 287 | 3e-25 | 217 - 276 | 100 | 60 / 60 | plus |
Contig Sequence (287 bp)
>U35_36927 287 Hv_44K_v2 GGATCGATGGAGCGAGCGGCCAAGTGTTGTGCGGCTCGTCGCGGGGTGGGGTGTCAGTTT GATTCGTTGTTCGGTGCTGTAAATCATCGTGCCGTGTTTGTGCAGTTTTAAACCTTTCTT TTTTTCCTTTTTGCGGGTAATTGTGCAGTTTTAAACTTTAGCGTGCAAAATAGCATACGA AGCGTTGCTTCTTCGTAGAGTTTGTAGCCCCGCTCTGAGTCCCGGAGAACGTGCAGAAAT AATAACGGAGCACAAGGATTTCATGGTTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_36927 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |