barSeed - Barley Seed Development Database

Probe CUST_34928_PI390587928

Source Contig U35_48901

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34928_PI390587928	Hv_44K_v2	GCACATGTGCCATATGTATAACACTCTTGAATCCAAACAGTGATAGTAATATCAAAAGAC	46	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.623	1.720	1.151	0.750	0.286	0.262
Raw	307.206	520.769	297.422	307.152	42.493	41.861

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41805.2	1707	8e-25	1492 - 1551	100	60 / 60	plus
JLOC1	JLOC1_41805.1	1706	8e-25	1491 - 1550	100	60 / 60	plus
Harvest35	U35_48901	481	3e-25	47 - 106	100	60 / 60	minus

Contig Sequence (481 bp)

>U35_48901 481 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTTTGAAAATGTGCCGAATAGCATAACTTGTCTTTTGATATTA
CTATCACTGTTTGGATTCAAGAGTGTTATACATATGGCACATGTGCCAACAACTTCGTTC
TGTGGAAATCTATCCTGTATAATTGGCCTTCTGAGCTCTAGAGATGTTACGAGAAAGAAC
CTCATAAGGACCGGGCTATAAGATTGTTTTGAATGTAGGGTCAGACTGTATGGCTGTTAG
AATCCAATAGCCTATCTGCTTCCGAAGGCAGCATATCGGATGACATTTCAAAATTTTGCT
TGGCTGTCATCTTGTTCCACTCATTCTCGACGCGGAAAAACACCCACTGGAACCGCCTCA
CCATTTCCAAAGCTGTTATCGCAAACACCGTCAGGTAGTTGTGCCGAAGATGCGCCGAGA
GCTTGTATGTCCATGTACATCGGAAAATGAGATTGCTACCCTAACACCCAATAAAATACC
C

Homology of Contig U35_48901 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None