barSeed - Barley Seed Development Database

Probe CUST_34923_PI390587928

Source Contig U35_48904

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34923_PI390587928	Hv_44K_v2	CATTGCATTGTCACGAACTAGGATGTGCCACAATTTATTTAACCCTTCTATTTTAGAGTA	64	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	13.392	9.007	1.958	0.223	0.321	0.285
Raw	301.713	290.813	56.720	8.896	3.796	3.979

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11433.1	360	2e-24	47 - 106	100	60 / 60	minus	None
JLOC1	JLOC1_7572.1	414	8e-25	102 - 161	100	60 / 60	minus
Harvest35	U35_48904	523	3e-25	65 - 124	100	60 / 60	minus

Contig Sequence (523 bp)

>U35_48904 523 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAGCAAATTAACATGAATATCTATAGCGAGCTCGTAGTAATAA
ATAATACTCTAAAATAGAAGGGTTAAATAAATTGTGGCACATCCTAGTTCGTGACAATGC
AATGATGCGCGAGGAATGCCGGATTAATGCTGAGCCTAGAGTACATTCATTTGACAAGGT
TGCACTTGGTCCTGATCTTCCCTTGGTTGCCGGTGAGCACGCCGATGGCGCCCATCTTGG
CCATGGAGACGCGGAAGTCCCGGAAGAATTGCCCGTTGTACCTGCCAGTGGCGGCGCGGC
GGACGTAGGCAGCGGTGAAGGGATGCTCCATGAGCCCGGCGTCCGACCTGAGCAGCCCGC
GCCTCCTGGCCACCTGCCGATAGTAGCTCGTGTCGAACGTCTCGCAGCTACCGGCGTCCA
TCTCCGCTGCCGCGCTGCTGTCGCCGGGGCCGCGGCAGCGCATTCTCAGCCTGTCGGCGT
ACCTTCCGTCCAGGGTCGGGTCGGTGCTGCGGATGCTGCCATT

Homology of Contig U35_48904 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g59537.1	331	4e-52
Arabidopsis v10	None