- Probe CUST_34922_PI390587928
- Source Contig U35_12976
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34922_PI390587928 | Hv_44K_v2 | CTCTGTTGTTGAGCGTTGGTCTCGTTGTTTCAATTTCAGTTTTTATTTATTCCGAGTTAA | 463 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.211 | 0.198 | 0.942 | 2.274 | 1.449 | 1.397 |
| Raw | 2.689 | 4.345 | 33.161 | 120.396 | 27.093 | 28.018 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361118 | 2536 | 2e-24 | 2355 - 2414 | 100 | 60 / 60 | plus | ABC40455 |
| JLOC1 | JLOC1_27935.1 | 1514 | 8e-25 | 1330 - 1389 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40455 | 544 | 3e-25 | 21 - 80 | 100 | 60 / 60 | minus | ABC40455 |
| Harvest35 | U35_12976 | 561 | 3e-25 | 464 - 523 | 100 | 60 / 60 | plus |
Contig Sequence (561 bp)
>U35_12976 561 Hv_44K_v2 GAGGACTGCGCGGGGTTCCTGCGCGGGCACAAGATCCTGACGAGGGCGGGAACCAGTTCG GGGCGGACCCCAGGTACGTCCGGGTCAGCATGCTCGACAGGGACGACGCGTACGACATCT TCATCAGGCGCCTCGCCTCTCTCAAATGACAAGGCCGTGCACGATTCACACGCGGAAAGT AAATCCAGCCGGCTGGACATGCATATGACCGAGAAGCAACTCTAGCATCGTCCGTGGATC GGTTTAGAATGACAAATGGAGACCGCCGCCGGCGACGTCTGCGACGGTGGCACGCCTTGG CATCCCTCGACATGCCGGTCCTGGGGCTGAGCATCAGTAGTAGTAGAATAGTCCGGGTAG GAAGAAGAGGACAAATGATTTGCTTTGGTTTTCGATCCGTGTTCTGTTTTTTCTTTTAAC TGATCCGTGCTCTGTTTTCTTTTTTCTTTTTAACAGATCCGTGCTCTGTTGTTGAGCGTT GGTCTCGTTGTTTCAATTTCAGTTTTTATTTATTCCGAGTTAAAATATGTATTTTTATGA ACTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_12976 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |