barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_34917_PI390587928Hv_44K_v2AGTGTTGGATTAGTCTTAGGTTGGTAATTAGTATTCTTATTGTAATCGGCAGCCATGTTT552GeneList: thistle2
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.4400.9882.3072.0950.8350.816
Raw 99.290345.229696.545963.164136.159152.305



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_77600.179527e-236310 - 63699859 / 60minus ABC12486 ABC17521 ABC33488
MLOCMLOC_77599.178747e-236310 - 63699859 / 60minus ABC12486 ABC17521 ABC33488
MLOCMLOC_77599.218227e-23408 - 4679859 / 60minus ABC12486 ABC17521 ABC33488
JLOC1JLOC1_51750.572986e-211220 - 12789757 / 59plus
JLOC1JLOC1_51750.472646e-211186 - 12449757 / 59plus
JLOC1JLOC1_51750.372836e-211205 - 12639757 / 59plus
JLOC1JLOC1_51750.272886e-211210 - 12689757 / 59plus
JLOC1JLOC1_51750.172256e-211147 - 12059757 / 59plus
Harvest21ABC334884802e-2168 - 1269757 / 59minusABC33488
Harvest35U35_129796522e-21354 - 4129757 / 59plus



Contig Sequence (652 bp)

>U35_12979 652 Hv_44K_v2
ATGTTTTGGTGTCAACTTTGGTTTGTTTCATTTCAAGATTCATAGGAAAATCGGAGGTGC
TTGTTTTGTTTGCGTTCTAGATTTAATTTCTCAGGAAGCCCCTTAAATGAACATGGAAGT
TTGCTTTTGAAGTGATCTGTTTGAAGGTTGTTTCAACTACAGTGAAGATGCTCTTGGTTT
GTCTCTGCAGAATTACTTCACTGTTGCTGTGTTTTTCTTTGGTGGTATGTCAAGGTGTAT
TCAGATGCTGGTTACTGTGTTGGAATCTACCAATCCTTCTGATCACTAGTTTGTGTGTAT
GATTTTCTAAACGGATATTTGGTTGGGCTTCAGCTGGTTTCATGTTCTGTCCGGTGTTGG
ATTAGTCTTAGGTTGGTAATTCGTATTCTTATTGTAATCTGCAGCCATGTTTTGTTAATT
AGTATGTTCTAATGCAATTTATGCTGTACACAATTGTCAATTATGCATCTGGTCTGATGT
TGCGAACTGTAACTGATGTAATTGTTGAATGATATGTATGGATGCCTTAATTTAGCCTTT
CGTCGTCTGTCCAGTGTTGGATTAGTCTTAGGTTGGTAATTAGTATTCTTATTGTAATCG
GCAGCCATGTTTTGTTAATTAGTATGTTCTAACGCAAAAAAAAAAAAAAAAA



Homology of Contig U35_12979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None