- Probe CUST_34901_PI390587928
- Source Contig U35_36936
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34901_PI390587928 | Hv_44K_v2 | CATGCTTTCTTCCAGGCCAAAAGTTTGGTCTAATAATATATGTTAGAACTAATCTTGCCA | 41 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.217 | 0.254 | 1.628 | 3.332 | 1.198 | 1.388 |
| Raw | 118.920 | 201.963 | 1261.693 | 3730.870 | 537.127 | 664.275 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_47476.1 | 1273 | 8e-25 | 1148 - 1207 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32435 | 323 | 3e-25 | 42 - 101 | 100 | 60 / 60 | minus | ABC32435 |
| Harvest35 | U35_36936 | 323 | 3e-25 | 42 - 101 | 100 | 60 / 60 | minus |
Contig Sequence (323 bp)
>U35_36936 323 Hv_44K_v2 TTTTTTTTTTTTTTTTTCTCAGGCATGCATATTTTATTATATGGCAAGATTAGTTCTAAC ATATATTATTAGACCAAACTTTTGGCCTGGAAGAAAGCATGAGATTCACCATTGTCAAAT GGGATGTACCTTTAAGTCCATGATAATCAAGCCTTTGCAGGGGATACAACCAACATAACA TAAGGGCATCTGGCAAGCTCGTCTTGGAAGCTTCCCTCATGGATATACCGCCGTTCCGGG GTCCTCACGAATTCATCCATAACATATCCAAAATGTTGGACTAATACTGGTTCAAACAAA GATCTCAAAAACATTGCGAACTT
Homology of Contig U35_36936 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |