barSeed - Barley Seed Development Database

Probe CUST_348_PI415269222

Source Contig AV833032

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_348_PI415269222	Hv_44K_v2	TTTTTGCTAGTTCTCTGCCCAGTTCACATCCTAGTTTCTCCCCAGAGAGATACCTTGAAA	499	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355134	2342	2e-24	1181 - 1240	100	60 / 60	plus	ABC23070
MLOC	MLOC_16945.2	2100	2e-24	1149 - 1208	100	60 / 60	minus	ABC23070
MLOC	MLOC_16945.3	1444	2e-24	493 - 552	100	60 / 60	minus	None
MLOC	MLOC_16945.1	2063	2e-24	1111 - 1170	100	60 / 60	minus	ABC23070
JLOC1	JLOC1_11698.1	2243	8e-25	894 - 953	100	60 / 60	plus
Harvest21	ABC19606	899	3e-25	704 - 763	100	60 / 60	plus
Harvest35	U35_23431	899	3e-25	704 - 763	100	60 / 60	plus

Contig Sequence (638 bp)

>AV833032 638 Hv_44K_v2
TCGGCACGAGGGCAGTTCATGGTGGAGCTGGTGGGCACCAAGGTGGTGGACGGCGAGGCG
CCGCCCAGGATCCTGCACTTCAACCCCAGGATCCGCGGGGACTACAGCGGCAAGCCGGTG
ATTGAGATGAACAGCTGCTACCGGATGCAGTGGGCGCGCTCGCACCGCTGCGAGGGCTTC
GCCTCCCGCCCCGCCGAAGAAACTGTTGATGGTCAACTCAAGTGTGAGAAATGGATTCGG
GATGATGACAACAAGTCGGAGGAGTCAAAGATGAAGTGGTGGGTGAAACGTTTAATTGGC
AGGTCAAAGGATGTGCACATCAGTTGGCCTTACCCATTCGCAGAAGGCAAGTTGTTTGTT
TTGACCCTCACCGCTGGTTTGGAAGGTTACCATGTCAATGTTGATGGGAGGCATGTCACT
TCGTTTCCTTACCGCACTGGTTACACTCTTGAGGATGCAACTGGATTGTCTATCAATGGA
GACATTGATATTGAGTCAATTTTTGCTAGTTCTCTGCCCAGTTCACATCCTAGTTTCTCC
CCAGAGAGATACCTTGAAATGTCGGAGCAATGGAGAGCCCCACCTCTACCAACTGAGCCT
GTCGAGCTGTTTATTGGCATTCTGTCAGCAGCGAGCCA

Homology of Contig AV833032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g09670.1	656	2e-132	protein\|galactosyltransferase family protein, putative, expressed
Brachypodium v1_2	Bradi1g54650.1	654	2e-133
Arabidopsis v10	AT1G74800.1	672	2e-97	Galactosyltransferase family protein \| chr1:28102221-28104993 REVERSE LENGTH=672