barSeed - Barley Seed Development Database

Probe CUST_34899_PI390587928

Source Contig U35_36938

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34899_PI390587928	Hv_44K_v2	ATAAAATTTCTAAATGTGCGCCACCGAGGTGTCTATAGCAAACATTTCAATATGCCTATG	50	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.010	0.325	2.614	4.619	11.665
Raw	7.642	16.690	1428.018	16763.267	10932.420	29891.867

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56982.1	1216	2e-24	758 - 817	100	60 / 60	plus	ABC00224 ABC33108
JLOC1	JLOC1_36880.1	863	8e-25	680 - 739	100	60 / 60	plus
Harvest21	ABC52903	627	3e-25	532 - 591	100	60 / 60	plus
Harvest21	ABC32446	747	3e-25	51 - 110	100	60 / 60	minus
Harvest35	U35_36938	747	3e-25	51 - 110	100	60 / 60	minus

Contig Sequence (747 bp)

>U35_36938 747 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTGGGTGTATGTTAATATTGCTACCATGATCAACATAGGCATA
TTGAAATGTTTGCTATAGACACCTCGGTGGCGCACATTTAGAAATTTTATCCATACATTA
TTCCAAGACCACTTTTATTTGTCACATGCAGTGATATATGACAGTTTATTAGCTAGTCAC
AACTGGAAGCTACATCACCAGTAATAGCCAGTAGTGCTGGGGATGTTGCAGGCAGGGCCC
TGGTTGCACCTGGGGGGCAGGTTCTTGGCTGCTTGTATCACTTTGACTGTCCGATCACGC
TGAAATCCGAAGAAACCACCGAGATCACGTTGGATTGATCCCTGGATGATGTTGCAGCGG
CATTGCGGTGGCATTTGACTCAACTGACTGCAACAATCGTGAAGGAGCTCTTCACAACCT
CCCTTCCACCATGTCCACCAACGCCAGGTGACCGGAAAATCCTTCATCGTTGTGCATCGA
TCTAGCAGGTAATTCCTGCAGGAATCTAGCTTTGTCCCTAGGGGGCATTGTTGAGCACCA
CCCCCACCAGCACCACCCTCGTAACTGCCAACAACTTCTCCGTACTGCGCGAAGGCGGCG
CTCGCTACCAAAGCAAGCAGACCCACGAGGAAGAAGGCCTTCATGTTGTGACAACTGTAT
CAAACGCTTCTGCAACTACAAATACCCTATGTTCATCCATCTATATTGCAACAGCTAAAC
CCATGCAAGGTATTCCTCCAGCAGCAG

Homology of Contig U35_36938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None