barSeed - Barley Seed Development Database

Probe CUST_34893_PI390587928

Source Contig U35_48911

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34893_PI390587928	Hv_44K_v2	GGTTCCTTTGTTCAGAAGTTAGTGTACATACTGAAGCTATGTAATTCTTTCATCGATGAA	15	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.183	0.421	0.961	1.833	1.328	1.023
Raw	3.497	17.627	36.981	104.791	27.747	24.416

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51907.1	1287	6e-24	49 - 107	100	59 / 59	minus	None
JLOC1	JLOC1_33191.1	1283	3e-24	127 - 185	100	59 / 59	minus
Harvest35	U35_48911	516	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (516 bp)

>U35_48911 516 Hv_44K_v2
TTTTTTTTTTTTTTTTTCATCGATGAAAGAATTACATAGCTTCAGTATGTACACTAACTT
CTGAACAAAGGAACCAGAAAATTAATGCTGGAGTGCAGCCTGCACTACAGACTACACCAA
GGTGCCACAAGCAGACGTGGAAGGGTCGTAAAGCGCAGGAAGCAAGTACTTCCTGCCATG
CGCGCCATTACAATTGTAGCTCGCCCCGGTGGCCTGGTCCACTTTGAGGTCGCCGGCGTA
GCCAGGGTACGCGCCGTTGCCGAAGACTCCTGGGCAGGCGGTGGCGGCCTCCAGCGGCGC
GTCGCTGCTGCCCTGGTAATACCCGTCGCCGAACGGGTTGGTCGCCGCGCCGGCGAGCAT
GCTCGCGAGGTTCATGACCATGGCGTCGGCCCCAACGTCGCCGTTGGGCGCCACGAGGGG
CGCGTCCTGGGGGCCGTAGGTGGGCTGGTGGAAGGGCCACGCGCACGCGCCGGGGCACTG
CGTCTCCGGGTTGCCGACCCAGATGTGGGTCGTGCC

Homology of Contig U35_48911 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52000.1	314	2e-83	protein\|phosphate-induced protein 1 conserved region domain containing protein, expressed
Brachypodium v1_2	Bradi3g58640.1	322	3e-79
Arabidopsis v10	AT4G08950.1	314	6e-72	\| Symbols: EXO \| Phosphate-responsive 1 family protein \| chr4:5740378-5741322 FORWARD LENGTH=314