barSeed - Barley Seed Development Database

Probe CUST_34892_PI390587928

Source Contig U35_12983

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34892_PI390587928	Hv_44K_v2	ATCTGGCGAACTAGTTCGACCACCTAATACTCAACCAGCAGATATCATGAAGGCAGATCA	32	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5444.5	4241	7e-23	94 - 153	98	59 / 60	plus	ABC10564 ABC10565
MLOC	MLOC_5444.4	4907	7e-23	760 - 819	98	59 / 60	plus	ABC10564 ABC10565
MLOC	MLOC_5444.3	5086	7e-23	946 - 1005	98	59 / 60	plus	ABC10564 ABC10565
MLOC	MLOC_5444.2	5081	7e-23	934 - 993	98	59 / 60	plus	ABC10564 ABC10565
MLOC	MLOC_5444.1	5105	7e-23	935 - 994	98	59 / 60	plus	ABC10564 ABC10565
JLOC1	JLOC1_3505.6	4613	4e-23	873 - 932	98	59 / 60	plus
JLOC1	JLOC1_3505.5	4620	4e-23	880 - 939	98	59 / 60	plus
JLOC1	JLOC1_3505.4	6360	4e-23	2207 - 2266	98	59 / 60	plus
JLOC1	JLOC1_3505.3	4857	4e-23	911 - 970	98	59 / 60	plus
JLOC1	JLOC1_3505.2	5091	4e-23	938 - 997	98	59 / 60	plus
JLOC1	JLOC1_3505.1	4994	4e-23	929 - 988	98	59 / 60	plus
Harvest21	ABC40709	290	3e-25	33 - 92	100	60 / 60	plus
Harvest35	U35_12983	290	3e-25	33 - 92	100	60 / 60	plus

Contig Sequence (290 bp)

>U35_12983 290 Hv_44K_v2
CAAAATGATACGGGGAAGAGCTTACCTGCTGGATCTGGCGAACTAGTTCGACCACCTAAT
ACTCAACCAGCAGATATCATGAAGGCAGATCAGCCGGCACATGATGGAAGTGCTCCCTTT
CCTGCCACAGGTACTCCAAATGAAGCTCAACAGCCACAGCCATACCCTCCTAACTATTGT
ATGCCCCCTCCACAGTTTGATTCATGGCGTGCACCTCCTGGTCACCCCCCTGAGGGAATG
AGGCATATAGGACCAGGTGGCCCATACAGACCAGTCGGACCCTCTAGCAA

Homology of Contig U35_12983 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None