- Probe CUST_34884_PI390587928
- Source Contig U35_48916
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_34884_PI390587928 | Hv_44K_v2 | CATGTTTCTTGTGGTGTGGTTTCAATTGTTTGATTTGAGGAAATACACTATCATTCTCAG | 8 | GeneList: yellowgreen MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.936 | 2.153 | 1.968 | 0.901 | 0.441 | 0.477 |
Raw | 671.079 | 2372.332 | 1835.227 | 1307.673 | 231.133 | 272.076 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_72620.1 | 1221 | 2e-24 | 1060 - 1119 | 100 | 60 / 60 | plus | None |
JLOC1 | JLOC1_48308.1 | 992 | 8e-25 | 867 - 926 | 100 | 60 / 60 | plus | |
Harvest35 | U35_48916 | 490 | 3e-25 | 9 - 68 | 100 | 60 / 60 | minus |
Contig Sequence (490 bp)
>U35_48916 490 Hv_44K_v2 TTTTTTTTCTGAGAATGATAGTGTATTTCCTCAAATCAAACAATTGAAACCACACCACAA GAAACATGCCTGAAATTTACAAAATTCAATTCACCCCACCGTCAAATAACTTCGCAGTTA ATGCTCGGCCGCTGTTGCTACTGCTAGCCGTTGGCACATTGAAAACCACAAGCGGCGCCG GCGCCGTCGCCGGCCCCGGCCACCAGTCACCACCACCACCACAAGAACGGCCTGACCTTG ACCCGGCATCCTCTGTTGGCCGCCGCCGCCTCGCCGGCCAGCTTGTCAACCGTCACCTGG CACGTCGCCTTCACGTCCACCGTCCACGTCCGCAGCACCTTCCCGAACCGCAGCCTCACG GGCAGCCGCGCCTCCACCGTCAGCGGCAACGCGCGCGCCGCCTGCTCCGCTGCCAGCTGC TTCCTCTGCTCGTCGCTGAAGCTCACGCCGGTCCCCCTCAGCGTCGTGGAGTACACCGTC ACGTTCCTCG
Homology of Contig U35_48916 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |