barSeed - Barley Seed Development Database

Probe CUST_34883_PI390587928

Source Contig U35_12988

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34883_PI390587928	Hv_44K_v2	GTGGATAACATTGTTGAGCGACTCTCGCAGTACAGAACAAAATTGGTGAGGTTAGGGCAT	757	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364297	2324	2e-24	798 - 857	100	60 / 60	plus	ABC11436
MLOC	MLOC_19779.2	1762	2e-24	883 - 942	100	60 / 60	plus	ABC11436
MLOC	MLOC_19779.1	2042	2e-24	1163 - 1222	100	60 / 60	plus	ABC05736 ABC11436
JLOC1	JLOC1_13702.1	2397	8e-25	835 - 894	100	60 / 60	plus
Harvest21	ABC21825	876	3e-25	758 - 817	100	60 / 60	plus
Harvest35	U35_12988	876	3e-25	758 - 817	100	60 / 60	plus

Contig Sequence (876 bp)

>U35_12988 876 Hv_44K_v2
GCGGAGAGGAGGGGGGCGGGGCTCCGGCAAGGGGGCGGCGGGGAAGATGATGTCGCTCCA
GGAGTTCGTCTCCTCCATGGCGCCCCTCATCGACCTGGAGAAGGCGGCGGAGATATCGGC
GGAGTCGGAGGCCAGCTCCAAGAGGAAGGAGAGGCGGGGGTCCGTCATGCCCAACCTCAA
GTGCACCGACGCCCAGACCGGGCTGATGGGGAAGACGCTCCTCGAGTTCCAGCCCAACAA
GGGCGACGTGCTTCCGCCTCACAAGTTCGGGACGCACGACGTGGTTGCCCTCAAGCCAAA
TAAAGCAGATGCTGGATCCCCTGCTCTTGGGCAAGGTGTAGTTTATCGCTTGAAGGATTC
TTCCATTACCGTTGTTTTCGATGATATTCCTGAAGATGGATTAAATAGCCCTCTCCGTCT
TGAGAAGCTTGCGAATGAGGTTACTTACCGCAGGATGAAAGATGCACTAATTCAACTTAG
CAAGGGCATCCAAGCAGGACCTTCTGCAAACCTTGTTCCTGTGTTATTTGGAGAGAACTC
GCCTATGCATTCCAAGGACGCCGTGAAGTTCAGTCCGTTTAACAAGAATTTGGACGACTC
ACAGAAACATGCTATCTCGAAGGCACTCAGATCCAGGGATGTTTTTTTGCTTCATGGACC
TCCTGGAACTGGAAAGACAACAACCATCATTGAGATAATATTGCAGGAGGTCAAGCGTGG
AGCAAAAATTCTTGCTTGTGCTGCTTCCAATATTGCTGTGGATAACATTGTTGAGCGACT
CTCGCAGTACAGAACAAAATTGGTGAGGTTAGGGCATCCTGCCCGTTTACTACCGCAAGT
GTTGGACAGTGCTCTTGATGCACAGGTACTCCGAGC

Homology of Contig U35_12988 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38990.1	652	3e-144	protein\|DNA-binding protein, putative, expressed
Brachypodium v1_2	Bradi1g15360.1	653	1e-146
Arabidopsis v10	AT2G03270.1	639	3e-112	DNA-binding protein, putative \| chr2:994071-995990 FORWARD LENGTH=639