barSeed - Barley Seed Development Database

Probe CUST_34881_PI390587928

Source Contig U35_12989

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34881_PI390587928	Hv_44K_v2	ACTATGTCAATGGGGATAGCTTGGCACTATACCTTTATGAGTCGACTCCTAGAAGATACT	607	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51356.1	2980	2e-24	2218 - 2277	100	60 / 60	plus	None
MLOC	MLOC_51356.2	3237	2e-24	2370 - 2429	100	60 / 60	plus	None
JLOC1	JLOC1_32803.1	3104	8e-25	2214 - 2273	100	60 / 60	plus
Harvest21	ABC26056	1057	3e-25	608 - 667	100	60 / 60	plus
Harvest35	U35_12989	1058	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (1058 bp)

>U35_12989 1058 Hv_44K_v2
AGCCGTCCAAATTTATTCAAGAGTCCAAAAGATAATGTCATTCCAACTAAGACAAGTTTC
TCAAATGACCATCTCTTAACATCTGCAGCTCGATCAATGTCTGCTCAGAAAGAGCTATTG
GCTGAGGCTGCTGTTGAATATGGATATGCTGATCCAAAGGAAGTCGTCGAGTCTACAAGC
TCTGGTGTGACCGAGACCTCGGCTGCAGCATCTGTTCGGGAGTCTTCTCCTCGGTCTGCG
TTGCCATCATCACCACATTTTCTTGATTCTAGATTCCATGAGGAACCTGTGACTTTTGAA
GTGTATTCACCAGATCGGTTGGTTGGAGAATTGATTTTCCTAGACAACACTTTAGTTTTC
ACAGCTGAAGACCTGTCCCGTGCTCCAGCAGAGGTTCTTGGAAGGAGCAGTCATGGTACA
ACCTACAAAGCAGCACTACAAAGCGGGCATGTCCTGACAGTGAAATGGTTGCGTGTTGGT
CTTGTAAAGCATAAGAAGGAATTCACTAAGGAGATAAAAAGGATTGGCACCATCAAGCAT
CCAAATATAATTTCATGGAGAGCGTTCTATTGGGGGCCAAAGGAGCAAGAAAGATTAATT
ATTTCTGACTATGTCAATGGGGATAGCTTGGCACTATACCTTTATGAGTCGACTCCTAGA
AGATACTCCCGCCTGTCAGTCTGTCAACGGCTCAAGATTGCAATTGATCTGGCCCGTTGC
CTCCAGTTCCTACATCATGAGAAGGGCCTGCCTCATGGCAACCTGAAGCCCACTAATATA
TTCCTGACCGGCCCTGATCTCTCTCCGAAGCTGGTTGATTACTGTCTCCACCGATTCACG
ACTCCAAGCGGTATTGCCGAGCAAATACTGAATCTAGGAGCATTGGGGTACCGAGCCCCC
GAGCTGGCAAGCGCGGCCAAGCCTACGCCGTCGTTCAAGGGCGACGTGTACGCGTTTGGT
GTGGTCGTCCTGGAGATGTTGACGCGGAAGAGCGCGGGGGACATCATCTCGGGGCAGTCG
GGCGCGGTGGACCTGACGGACTGGGTTCAGATGTGCAA

Homology of Contig U35_12989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g43350.1	1060	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi1g20750.1	1060	0.0
Arabidopsis v10	AT5G10020.1	1048	2e-132	Leucine-rich receptor-like protein kinase family protein \| chr5:3133514-3136949 FORWARD LENGTH=1048