barSeed - Barley Seed Development Database

Probe CUST_34877_PI390587928

Source Contig U35_24963

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34877_PI390587928	Hv_44K_v2	TGTCGGATTTTTCATGTTCATGATCGTATTTGTCTGTTGCATTGGGTGATCGACAAAAAA	546	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.222	1.638	1.413	0.887	0.283	0.244
Raw	1096.198	2370.935	1699.313	1724.625	189.267	178.954

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65813.2	762	6e-24	173 - 231	100	59 / 59	minus	ABC24779
Harvest21	ABC24779	617	3e-25	12 - 71	100	60 / 60	minus	ABC24779
Harvest35	U35_24963	617	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (617 bp)

>U35_24963 617 Hv_44K_v2
GACCTCCCGCGCGCGCCCCGCCTCGCCCAGCTCCACTGGAACTGCCCCGCGCACCTCGCC
CAGCTCGCCGCCCCGCGCCGCTACGACCTCGTCGTCGCCGCCGACGTCGTGTACGTCCAG
GAGTCCGTGCCCCACCTCGTCGCCGCCATGGACGCGCTCGCCGACGCCGAGCGCGGCGTC
GTGCTCCTCGGCTACCAGATCCGGTCCCCCGAGGCGCACCAGGCCTTCTGGGACGCCGTG
CCCGCCGCCTTCCCGGTGATCGAGAAGGTGCCCCGGGAGCACCTTGACCCGGAGTACGCC
TTCGAGGAATCCGACGTGTTCGTGCTCCGCAGGAGGCCGCGGCAGTGAGATTTTGCTCTA
TTGCGTCAGTCATTTACATAGCAGGTTTGCAAGAATTGCCTATTCCAGTTCAAAAGCATG
AGCATTTAGTTGTGATGGCCGATGAAGGCCGCTGATATAGGAAGTGATGAATGTTTTGGC
TTCCATGGGTTAATGTTTAAGTAACATGTTAAGTTTCACTTTCACCTATGTTTTGTGGTG
TAAACATGTCGGATTTTTCATGTTCATGATCGTATTTGTCTGTTGCATTGGGTGATCGAC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_24963 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48950.1	225	7e-60	protein\|expressed protein
Brachypodium v1_2	Bradi2g16530.1	225	8e-58
Arabidopsis v10	None